Class: Publication

A resource that is the output of a publishing process.

erDiagram Publication { W3CISO8601 date_published string locator string title string display_label string display_note stringList editorial_note uriorcurie pid uriorcurieList broad_mappings uriorcurieList close_mappings string description uriorcurieList exact_mappings uriorcurieList narrow_mappings uriorcurieList related_mappings NodeUriOrCurie schema_type } Statement { } Property { uriorcurie pid uriorcurieList broad_mappings uriorcurieList close_mappings string description uriorcurieList exact_mappings uriorcurieList narrow_mappings uriorcurieList related_mappings NodeUriOrCurie schema_type } Thing { uriorcurie pid uriorcurieList broad_mappings uriorcurieList close_mappings string description uriorcurieList exact_mappings uriorcurieList narrow_mappings uriorcurieList related_mappings NodeUriOrCurie schema_type } AttributeSpecification { uriorcurieList broad_mappings uriorcurieList close_mappings string description uriorcurieList exact_mappings uriorcurieList narrow_mappings uriorcurieList related_mappings NodeUriOrCurie schema_type uriorcurie range string value } Annotation { string annotation_value } Identifier { uriorcurie creator string notation NodeUriOrCurie schema_type } Publication ||--}o Thing : "about" Publication ||--}o Thing : "authors" Publication ||--|o Thing : "kind" Publication ||--|o Thing : "published_at" Publication ||--}o Identifier : "identifiers" Publication ||--}o Thing : "relations" Publication ||--}o Annotation : "annotations" Publication ||--}o AttributeSpecification : "attributes" Publication ||--}o Statement : "characterized_by" Statement ||--|| Thing : "object" Statement ||--|| Property : "predicate" Property ||--}o Thing : "relations" Property ||--}o Annotation : "annotations" Property ||--}o AttributeSpecification : "attributes" Property ||--}o Statement : "characterized_by" Thing ||--}o Thing : "relations" Thing ||--}o Annotation : "annotations" Thing ||--}o AttributeSpecification : "attributes" Thing ||--}o Statement : "characterized_by" AttributeSpecification ||--|| Property : "predicate" AttributeSpecification ||--}o Annotation : "annotations" AttributeSpecification ||--}o AttributeSpecification : "attributes" AttributeSpecification ||--}o Statement : "characterized_by" Annotation ||--|o Thing : "annotation_tag"

Press "Alt" / "Option" to enable Pan & Zoom

Inheritance

Thing [ ThingMixin]
- FlatThing
  - Publication

Slots

Name	Cardinality and Range	Description	Inheritance
about	* Thing	A relation of an information artifact to the subject, such as a URL identifyi...	direct
authors	* Thing	People that contributed to a document in the author role	direct
date_published	0..1 W3CISO8601	Timepoint at which the subject was (last) published	direct
kind	0..1 Thing	The nature of the subject	direct
locator	0..1 String	A descriptive identifier that locates the publication within the publication ...	direct
title	1 String	A summarily description of the subject	direct
published_at	0..1 Thing	The venue a publication was made	direct
display_label	0..1 String	Label that can be shown when the metadata record is displayed as an item	FlatThing
display_note	0..1 String	Note that can be shown when the record is displayed as an item	FlatThing
editorial_note	* String	A comment about a metadata record either providing additional information for...	FlatThing
identifiers	* Identifier	An unambiguous reference to the subject within a given context	FlatThing
pid	1 Uriorcurie	Persistent and globally unique identifier of a `Thing`	Thing
relations	* Thing	Declares an unqualified relation of the subject `Thing` to another `Thing`	Thing
annotations	* Annotation	A record of properties of the metadata record on a subject, a collection of t...	ThingMixin
broad_mappings	* Uriorcurie	A list of terms from different schemas or terminology systems that have broad...	ThingMixin
close_mappings	* Uriorcurie	A list of terms from different schemas or terminology systems that have close...	ThingMixin
description	0..1 String	A free-text account of the subject	ThingMixin
exact_mappings	* Uriorcurie	A list of terms from different schemas or terminology systems that have ident...	ThingMixin
attributes	* AttributeSpecification	Declares a relation that associates a `Thing` (or another attribute) with an ...	ThingMixin
characterized_by	* Statement	Qualifies relationships between a subject `Thing` and an object `Thing` with ...	ThingMixin
narrow_mappings	* Uriorcurie	A list of terms from different schemas or terminology systems that have narro...	ThingMixin
related_mappings	* Uriorcurie	A list of terms from different schemas or terminology systems that have relat...	ThingMixin
schema_type	0..1 NodeUriOrCurie	State that the subject is an instance of a particular schema class	ThingMixin

Identifier and Mapping Information

Schema Source

from schema: https://concepts.datalad.org/s/flat-publications

Mappings

Mapping Type	Mapped Value
self	dlflatpublications:Publication
native	dlflatpublications:Publication
exact	obo:IAO_0000311

Examples

Example: Publication-02-attributes

pid: https://doi.org/10.1038/s41597-022-01163-2
title: "FAIRly big: A framework for computationally reproducible processing of large-scale data"
published_at: https://portal.issn.org/resource/ISSN/2052-4463
locator: "9, 80"
date_published: "2022-03-11"
description:
  "Large-scale datasets present unique opportunities to perform scientific investigations with unprecedented breadth. However, they also pose considerable challenges for the findability, accessibility, interoperability, and reusability (FAIR) of research outcomes due to infrastructure limitations, data usage constraints, or software license restrictions. Here we introduce a DataLad-based, domain-agnostic framework suitable for reproducible data processing in compliance with open science mandates. The framework attempts to minimize platform idiosyncrasies and performance-related complexities. It affords the capture of machine-actionable computational provenance records that can be used to retrace and verify the origins of research outcomes, as well as be re-executed independent of the original computing infrastructure. We demonstrate the framework’s performance using two showcases: one highlighting data sharing and transparency (using the studyforrest.org dataset) and another highlighting scalability (using the largest public brain imaging dataset available: the UK Biobank dataset)."
about:
  - https://www.nature.com/subjects/data-processing
  - https://www.nature.com/subjects/data-publication-and-archiving
  - https://www.nature.com/subjects/software
# journal article
kind: obo:OMIT_0016934
authors:
  - http://orcid.org/0000-0003-2917-3450
  - http://orcid.org/0000-0003-2213-7465
  - http://orcid.org/0000-0003-0820-2662
  - http://orcid.org/0000-0001-7163-3110
  - http://orcid.org/0000-0002-8402-6173
  - http://orcid.org/0000-0001-7628-0801
  - http://orcid.org/0000-0001-6398-6370

LinkML Source

Direct

name: Publication
description: A resource that is the output of a publishing process.
from_schema: https://concepts.datalad.org/s/flat-publications
exact_mappings:
- obo:IAO_0000311
is_a: FlatThing
slots:
- about
- authors
- date_published
- kind
- locator
- title
- published_at
slot_usage:
  title:
    name: title
    annotations:
      sh:order:
        tag: sh:order
        value: 1
    required: true
  authors:
    name: authors
    annotations:
      sh:order:
        tag: sh:order
        value: 2
  published_at:
    name: published_at
    annotations:
      sh:order:
        tag: sh:order
        value: 3
  locator:
    name: locator
    annotations:
      sh:order:
        tag: sh:order
        value: 4
    description: A descriptive identifier that locates the publication within the
      publication venue. This can be a unique name, a numerical key, or another notation
      that uniquely identifies the subject within that context.
  kind:
    name: kind
    annotations:
      sh:order:
        tag: sh:order
        value: 5
  about:
    name: about
    annotations:
      sh:order:
        tag: sh:order
        value: 6
    multivalued: true
  date_published:
    name: date_published
    annotations:
      sh:order:
        tag: sh:order
        value: 7

Induced

name: Publication
description: A resource that is the output of a publishing process.
from_schema: https://concepts.datalad.org/s/flat-publications
exact_mappings:
- obo:IAO_0000311
is_a: FlatThing
slot_usage:
  title:
    name: title
    annotations:
      sh:order:
        tag: sh:order
        value: 1
    required: true
  authors:
    name: authors
    annotations:
      sh:order:
        tag: sh:order
        value: 2
  published_at:
    name: published_at
    annotations:
      sh:order:
        tag: sh:order
        value: 3
  locator:
    name: locator
    annotations:
      sh:order:
        tag: sh:order
        value: 4
    description: A descriptive identifier that locates the publication within the
      publication venue. This can be a unique name, a numerical key, or another notation
      that uniquely identifies the subject within that context.
  kind:
    name: kind
    annotations:
      sh:order:
        tag: sh:order
        value: 5
  about:
    name: about
    annotations:
      sh:order:
        tag: sh:order
        value: 6
    multivalued: true
  date_published:
    name: date_published
    annotations:
      sh:order:
        tag: sh:order
        value: 7
attributes:
  about:
    name: about
    annotations:
      sh:order:
        tag: sh:order
        value: 6
    description: A relation of an information artifact to the subject, such as a URL
      identifying the topic of a document.
    from_schema: https://concepts.datalad.org/s/flat-publications
    exact_mappings:
    - schema:about
    - obo:IAO_0000136
    rank: 1000
    alias: about
    owner: Publication
    domain_of:
    - Publication
    range: Thing
    multivalued: true
  authors:
    name: authors
    annotations:
      sh:order:
        tag: sh:order
        value: 2
    description: People that contributed to a document in the author role.
    from_schema: https://concepts.datalad.org/s/flat-publications
    rank: 1000
    alias: authors
    owner: Publication
    domain_of:
    - Publication
    range: Thing
    multivalued: true
  date_published:
    name: date_published
    annotations:
      sh:order:
        tag: sh:order
        value: 7
    description: Timepoint at which the subject was (last) published.
    from_schema: https://concepts.datalad.org/s/flat-publications
    exact_mappings:
    - schema:datePublished
    - dcterms:issued
    rank: 1000
    alias: date_published
    owner: Publication
    domain_of:
    - Publication
    range: W3CISO8601
  kind:
    name: kind
    annotations:
      sh:order:
        tag: sh:order
        value: 5
    description: The nature of the subject.
    from_schema: https://concepts.datalad.org/s/flat-publications
    exact_mappings:
    - dcterms:type
    rank: 1000
    alias: kind
    owner: Publication
    domain_of:
    - Publication
    range: Thing
  locator:
    name: locator
    annotations:
      sh:order:
        tag: sh:order
        value: 4
    description: A descriptive identifier that locates the publication within the
      publication venue. This can be a unique name, a numerical key, or another notation
      that uniquely identifies the subject within that context.
    notes:
    - For specifying a location via a globally unique identifier see `at_location`.
    from_schema: https://concepts.datalad.org/s/flat-publications
    exact_mappings:
    - bibo:locator
    rank: 1000
    alias: locator
    owner: Publication
    domain_of:
    - Publication
    range: string
  title:
    name: title
    annotations:
      sh:order:
        tag: sh:order
        value: 1
    description: A summarily description of the subject. It is closely related to
      a `name`, but often less compact and more descriptive. Typically used for documents.
    from_schema: https://concepts.datalad.org/s/flat-publications
    exact_mappings:
    - dcterms:title
    related_mappings:
    - schema:name
    rank: 1000
    alias: title
    owner: Publication
    domain_of:
    - Publication
    range: string
    required: true
  published_at:
    name: published_at
    annotations:
      sh:order:
        tag: sh:order
        value: 3
    description: The venue a publication was made.
    from_schema: https://concepts.datalad.org/s/flat-publications
    rank: 1000
    alias: published_at
    owner: Publication
    domain_of:
    - Publication
    range: Thing
  display_label:
    name: display_label
    description: Label that can be shown when the metadata record is displayed as
      an item.
    title: Record display label
    from_schema: https://concepts.datalad.org/s/flat-publications
    rank: 1000
    slot_uri: skos:prefLabel
    alias: display_label
    owner: Publication
    domain_of:
    - FlatThing
    range: string
  display_note:
    name: display_note
    annotations:
      dash:singleLine:
        tag: dash:singleLine
        value: false
    description: Note that can be shown when the record is displayed as an item. This
      is typically longer than a label.
    title: Record display note
    from_schema: https://concepts.datalad.org/s/flat-publications
    rank: 1000
    slot_uri: skos:note
    alias: display_note
    owner: Publication
    domain_of:
    - FlatThing
    range: string
  editorial_note:
    name: editorial_note
    annotations:
      dash:singleLine:
        tag: dash:singleLine
        value: false
    description: A comment about a metadata record either providing additional information
      for a record curation, or leaving a comment after curation occurred. This can
      be used to include information that is deemed relevant, but could not be expressed
      in the provided fields.
    title: Editorial note
    from_schema: https://concepts.datalad.org/s/flat-publications
    rank: 1000
    slot_uri: skos:editorialNote
    alias: editorial_note
    owner: Publication
    domain_of:
    - FlatThing
    range: string
    multivalued: true
  identifiers:
    name: identifiers
    description: An unambiguous reference to the subject within a given context.
    from_schema: https://concepts.datalad.org/s/flat-publications
    exact_mappings:
    - dcterms:identifier
    - schema:identifier
    - ADMS:identifier
    rank: 1000
    slot_uri: dlidentifiers:identifier
    alias: identifiers
    owner: Publication
    domain_of:
    - FlatThing
    range: Identifier
    multivalued: true
    inlined: true
    inlined_as_list: true
  pid:
    name: pid
    annotations:
      sh:order:
        tag: sh:order
        value: 1
    description: Persistent and globally unique identifier of a `Thing`.
    title: Persistent identifier
    from_schema: https://concepts.datalad.org/s/flat-publications
    exact_mappings:
    - dcterms:identifier
    - schema:identifier
    - ADMS:identifier
    rank: 1000
    slot_uri: dlthings:pid
    identifier: true
    alias: pid
    owner: Publication
    domain_of:
    - Thing
    range: uriorcurie
    required: true
  relations:
    name: relations
    annotations:
      sh:order:
        tag: sh:order
        value: 6
    description: Declares an unqualified relation of the subject `Thing` to another
      `Thing`. This schema slot is used to define related things inline. If such a
      definition is not needed. A qualified relationship can be declared directly
      using the `characterized_by` slot.
    title: Relations
    from_schema: https://concepts.datalad.org/s/flat-publications
    exact_mappings:
    - dcat:relation
    - dcterms:relation
    rank: 1000
    domain: Thing
    slot_uri: dlthings:relation
    alias: relations
    owner: Publication
    domain_of:
    - Thing
    symmetric: true
    relational_role: OBJECT
    range: Thing
    multivalued: true
    inlined: true
    inlined_as_list: false
  annotations:
    name: annotations
    annotations:
      sh:order:
        tag: sh:order
        value: 5
    description: A record of properties of the metadata record on a subject, a collection
      of tag/text tuples with the semantics of OWL Annotation.
    title: Annotations
    from_schema: https://concepts.datalad.org/s/flat-publications
    exact_mappings:
    - obo:NCIT_C44272
    rank: 1000
    slot_uri: dlthings:annotations
    alias: annotations
    owner: Publication
    domain_of:
    - ThingMixin
    range: Annotation
    multivalued: true
    inlined: true
  broad_mappings:
    name: broad_mappings
    annotations:
      sh:order:
        tag: sh:order
        value: 9
    description: A list of terms from different schemas or terminology systems that
      have broader meaning.
    title: Broad mappings
    from_schema: https://concepts.datalad.org/s/flat-publications
    rank: 1000
    is_a: mappings
    slot_uri: skos:broadMatch
    alias: broad_mappings
    owner: Publication
    domain_of:
    - ThingMixin
    range: uriorcurie
    multivalued: true
  close_mappings:
    name: close_mappings
    annotations:
      sh:order:
        tag: sh:order
        value: 8
    description: A list of terms from different schemas or terminology systems that
      have close meaning.
    title: Close mappings
    from_schema: https://concepts.datalad.org/s/flat-publications
    rank: 1000
    is_a: mappings
    slot_uri: skos:closeMatch
    alias: close_mappings
    owner: Publication
    domain_of:
    - ThingMixin
    range: uriorcurie
    multivalued: true
  description:
    name: description
    annotations:
      sh:order:
        tag: sh:order
        value: 4
      dash:singleLine:
        tag: dash:singleLine
        value: false
    description: A free-text account of the subject.
    title: Description
    from_schema: https://concepts.datalad.org/s/flat-publications
    exact_mappings:
    - dcterms:description
    - rdfs:comment
    broad_mappings:
    - obo:IAO_0000300
    rank: 1000
    slot_uri: dlthings:description
    alias: description
    owner: Publication
    domain_of:
    - ThingMixin
    range: string
  exact_mappings:
    name: exact_mappings
    annotations:
      sh:order:
        tag: sh:order
        value: 7
    description: A list of terms from different schemas or terminology systems that
      have identical meaning.
    title: Exact mappings
    from_schema: https://concepts.datalad.org/s/flat-publications
    rank: 1000
    is_a: mappings
    slot_uri: skos:exactMatch
    alias: exact_mappings
    owner: Publication
    domain_of:
    - ThingMixin
    range: uriorcurie
    multivalued: true
  attributes:
    name: attributes
    annotations:
      sh:order:
        tag: sh:order
        value: 3
    description: Declares a relation that associates a `Thing` (or another attribute)
      with an attribute, where an attribute is an intrinsic characteristic, such as
      a quality, capability, disposition, function, or is an externally derived attribute
      determined from some descriptor (e.g. a quantity, position, label/identifier).
      Technically, this declaration is done via an `AttributeSpecification` that combines
      a `predicate` with a value declaration and the attribute-related slots of a
      `Thing`. Importantly, such attributes are declared inline, because they do not
      have a unique identifier. If an identifier is available, a `Thing` declaration
      (see `relation`), and a qualification of that relationship via a `Statement`
      (see `characterized_by`) should be preferred.
    title: Attributes
    from_schema: https://concepts.datalad.org/s/flat-publications
    exact_mappings:
    - sio:SIO_000008
    rank: 1000
    slot_uri: dlthings:attributes
    alias: attributes
    owner: Publication
    domain_of:
    - ThingMixin
    range: AttributeSpecification
    multivalued: true
    inlined: true
    inlined_as_list: true
  characterized_by:
    name: characterized_by
    annotations:
      sh:order:
        tag: sh:order
        value: 2
    description: Qualifies relationships between a subject `Thing` and an object `Thing`
      with a `Statement` declaring a `predicate` on the nature of the relationship.
    title: Is characterized by
    from_schema: https://concepts.datalad.org/s/flat-publications
    exact_mappings:
    - obo:RO_0000053
    rank: 1000
    slot_uri: dlthings:characterized_by
    alias: characterized_by
    owner: Publication
    domain_of:
    - ThingMixin
    range: Statement
    multivalued: true
    inlined: true
    inlined_as_list: true
  narrow_mappings:
    name: narrow_mappings
    annotations:
      sh:order:
        tag: sh:order
        value: 10
    description: A list of terms from different schemas or terminology systems that
      have narrower meaning.
    title: Narrow mappings
    from_schema: https://concepts.datalad.org/s/flat-publications
    rank: 1000
    is_a: mappings
    slot_uri: skos:narrowMatch
    alias: narrow_mappings
    owner: Publication
    domain_of:
    - ThingMixin
    range: uriorcurie
    multivalued: true
  related_mappings:
    name: related_mappings
    annotations:
      sh:order:
        tag: sh:order
        value: 11
    description: A list of terms from different schemas or terminology systems that
      have related meaning.
    title: Related mappings
    from_schema: https://concepts.datalad.org/s/flat-publications
    rank: 1000
    is_a: mappings
    slot_uri: skos:relatedMatch
    alias: related_mappings
    owner: Publication
    domain_of:
    - ThingMixin
    range: uriorcurie
    multivalued: true
  schema_type:
    name: schema_type
    description: State that the subject is an instance of a particular schema class.
      Typically, no explicit value needs to be assigned to this slot, because it matches
      the class type of a particular record. However, this slots can be used as a
      type designator of a schema element for validation and schema structure handling
      purposes. This is used to indicate specialized schema classes for properties
      that accept a hierarchy of classes as their range.
    from_schema: https://concepts.datalad.org/s/flat-publications
    exact_mappings:
    - dcterms:type
    rank: 1000
    slot_uri: rdf:type
    designates_type: true
    alias: schema_type
    owner: Publication
    domain_of:
    - ThingMixin
    - Identifier
    range: NodeUriOrCurie