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Class: Genesis (XYZGenesis)

A process in which an entity comes into being as a result of the process.

URI: xyzra:XYZGenesis

erDiagram
Annotation {
    string annotation_value  
}
AttributeSpecification {
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
    uriorcurie range  
    string value  
}
Identifier {
    uriorcurie creator  
    string notation  
    NodeUriOrCurie schema_type  
}
Property {
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
Statement {

}
Thing {
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZConvention {
    string title  
    string short_name  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZGenesis {
    string name  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZObjective {
    string title  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZPersonAttribution {
    string display_label  
}
XYZProject {
    string short_name  
    string title  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}

Annotation ||--|o Thing : "annotation_tag"
AttributeSpecification ||--|| Property : "predicate"
AttributeSpecification ||--}o Annotation : "annotations"
AttributeSpecification ||--}o AttributeSpecification : "attributes"
AttributeSpecification ||--}o Statement : "characterized_by"
Property ||--}o Annotation : "annotations"
Property ||--}o AttributeSpecification : "attributes"
Property ||--}o Statement : "characterized_by"
Property ||--}o Thing : "relations"
Statement ||--|| Property : "predicate"
Statement ||--|| Thing : "object"
Thing ||--}o Annotation : "annotations"
Thing ||--}o AttributeSpecification : "attributes"
Thing ||--}o Statement : "characterized_by"
Thing ||--}o Thing : "relations"
XYZConvention ||--}o Annotation : "annotations"
XYZConvention ||--}o AttributeSpecification : "attributes"
XYZConvention ||--}o Identifier : "identifiers"
XYZConvention ||--}o Statement : "characterized_by"
XYZConvention ||--}o Thing : "relations"
XYZGenesis ||--|o Thing : "part_of"
XYZGenesis ||--|o XYZConvention : "conforms_to"
XYZGenesis ||--}o Annotation : "annotations"
XYZGenesis ||--}o AttributeSpecification : "attributes"
XYZGenesis ||--}o Identifier : "identifiers"
XYZGenesis ||--}o Statement : "characterized_by"
XYZGenesis ||--}o Thing : "relations"
XYZGenesis ||--}o Thing : "used"
XYZGenesis ||--}o XYZObjective : "target"
XYZObjective ||--|o XYZObjective : "depends_on"
XYZObjective ||--|o XYZProject : "part_of"
XYZObjective ||--}o Annotation : "annotations"
XYZObjective ||--}o AttributeSpecification : "attributes"
XYZObjective ||--}o Identifier : "identifiers"
XYZObjective ||--}o Statement : "characterized_by"
XYZObjective ||--}o Thing : "relations"
XYZObjective ||--}o XYZPersonAttribution : "attributed_to"
XYZPersonAttribution ||--|o XYZPerson : "object"
XYZPersonAttribution ||--}o XYZAgentRole : "roles"
XYZProject ||--|o XYZProject : "part_of"
XYZProject ||--}o Annotation : "annotations"
XYZProject ||--}o AttributeSpecification : "attributes"
XYZProject ||--}o Identifier : "identifiers"
XYZProject ||--}o Statement : "characterized_by"
XYZProject ||--}o Thing : "relations"
XYZProject ||--}o XYZObjective : "target"
XYZProject ||--}o XYZPersonAttribution : "attributed_to"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
conforms_to 0..1
XYZConvention		 An established standard to which the subject conforms direct
name 0..1
String		 Name of the subject direct
part_of 0..1
Thing or 
XYZStudy or 
XYZGenesis		 The entity that the subject is a part of direct
target *
XYZObjective		 An objective that is the focus of an activity direct
used *
Thing or 
XYZDistribution or 
XYZInstrument		 An entity that was being used by an activity or in a process direct
display_label 0..1
String		 Label that can be shown when the metadata record is displayed as an item FlatThing
display_note 0..1
String		 Note that can be shown when the record is displayed as an item FlatThing
editorial_note *
String		 A comment about a metadata record either providing additional information for... FlatThing
identifiers *
Identifier		 An unambiguous reference to the subject within a given context FlatThing
pid 1
Uriorcurie		 Persistent and globally unique identifier of a Thing Thing
relations *
Thing		 Declares an unqualified relation of the subject Thing to another Thing Thing
annotations *
Annotation		 A record of properties of the metadata record on a subject, a collection of t... ThingMixin
broad_mappings *
Uriorcurie		 A list of terms from different schemas or terminology systems that have broad... ThingMixin
close_mappings *
Uriorcurie		 A list of terms from different schemas or terminology systems that have close... ThingMixin
description 0..1
String		 A free-text account of the subject ThingMixin
exact_mappings *
Uriorcurie		 A list of terms from different schemas or terminology systems that have ident... ThingMixin
attributes *
AttributeSpecification		 Declares a relation that associates a Thing (or another attribute) with an ... ThingMixin
characterized_by *
Statement		 Qualifies relationships between a subject Thing and an object Thing with ... ThingMixin
narrow_mappings *
Uriorcurie		 A list of terms from different schemas or terminology systems that have narro... ThingMixin
related_mappings *
Uriorcurie		 A list of terms from different schemas or terminology systems that have relat... ThingMixin
schema_type 0..1
NodeUriOrCurie		 State that the subject is an instance of a particular schema class ThingMixin

Usages

used by used in type used
XYZDataItem generated_by range XYZGenesis
XYZGenesis part_of any_of[range] XYZGenesis

Comments

  • This class is intended to cover generative processes and activities, while Study covers investigational (scientific) activities, and Project covers organizational activities.

Identifier and Mapping Information

Schema Source

  • from schema: https://concepts.datalad.org/s/demo-research-assets/unreleased

Mappings

Mapping Type Mapped Value
self xyzra:XYZGenesis
native xyzra:XYZGenesis
exact obo:NCIT_C48151, obo:IDO_0000607
broad obo:BFO_0000015, prov:Activity

Examples

Example: XYZGenesis-02-attributes

pid: https://example.org/bpm-1
name: blood pressure measurement (children)
conforms_to: doi:10.1111/j.1524-6175.2005.04377.x
used:
  # Blood pressure cuff, pediatric size (physical object)
  - http://snomed.info/id/720736009
broad_mappings:
  # blood pressure measurement
  - obo:MAXO_0000494

LinkML Source

Direct

name: XYZGenesis
description: A process in which an entity comes into being as a result of the process.
title: Genesis
comments:
- This class is intended to cover generative processes and activities, while `Study`
  covers investigational (scientific) activities, and `Project` covers organizational
  activities.
from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
exact_mappings:
- obo:NCIT_C48151
- obo:IDO_0000607
broad_mappings:
- obo:BFO_0000015
- prov:Activity
is_a: FlatThing
slots:
- conforms_to
- name
- part_of
- target
- used
slot_usage:
  name:
    name: name
    annotations:
      sh:order:
        tag: sh:order
        value: 1.0
  description:
    name: description
    annotations:
      sh:order:
        tag: sh:order
        value: 2.0
      dash:singleLine:
        tag: dash:singleLine
        value: false
  conforms_to:
    name: conforms_to
    annotations:
      sh:order:
        tag: sh:order
        value: 3.0
    range: XYZConvention
  used:
    name: used
    annotations:
      sh:order:
        tag: sh:order
        value: 4.0
    multivalued: true
    any_of:
    - range: XYZDistribution
    - range: XYZInstrument
  part_of:
    name: part_of
    annotations:
      sh:order:
        tag: sh:order
        value: 5.0
    any_of:
    - range: XYZStudy
    - range: XYZGenesis
  target:
    name: target
    annotations:
      sh:order:
        tag: sh:order
        value: 6.0
    multivalued: true

Induced

name: XYZGenesis
description: A process in which an entity comes into being as a result of the process.
title: Genesis
comments:
- This class is intended to cover generative processes and activities, while `Study`
  covers investigational (scientific) activities, and `Project` covers organizational
  activities.
from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
exact_mappings:
- obo:NCIT_C48151
- obo:IDO_0000607
broad_mappings:
- obo:BFO_0000015
- prov:Activity
is_a: FlatThing
slot_usage:
  name:
    name: name
    annotations:
      sh:order:
        tag: sh:order
        value: 1.0
  description:
    name: description
    annotations:
      sh:order:
        tag: sh:order
        value: 2.0
      dash:singleLine:
        tag: dash:singleLine
        value: false
  conforms_to:
    name: conforms_to
    annotations:
      sh:order:
        tag: sh:order
        value: 3.0
    range: XYZConvention
  used:
    name: used
    annotations:
      sh:order:
        tag: sh:order
        value: 4.0
    multivalued: true
    any_of:
    - range: XYZDistribution
    - range: XYZInstrument
  part_of:
    name: part_of
    annotations:
      sh:order:
        tag: sh:order
        value: 5.0
    any_of:
    - range: XYZStudy
    - range: XYZGenesis
  target:
    name: target
    annotations:
      sh:order:
        tag: sh:order
        value: 6.0
    multivalued: true
attributes:
  conforms_to:
    name: conforms_to
    annotations:
      sh:order:
        tag: sh:order
        value: 3.0
    description: An established standard to which the subject conforms.
    comments:
    - This property SHOULD be used to indicate a model, schema, ontology, view or
      profile that the subject conforms to.
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - dcterms:conformsTo
    rank: 1000
    alias: conforms_to
    owner: XYZGenesis
    domain_of:
    - XYZGenesis
    range: XYZConvention
  name:
    name: name
    annotations:
      sh:order:
        tag: sh:order
        value: 1.0
    description: Name of the subject. A name is closely related to a `title`, but
      often more compact and identifier-like, but without the implication of uniqueness
      of an identifier. A name is often used by technical systems to display an item
      in an organizational structure, such as a file in a directory hierarchy.
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - rdfs:label
    - schema:name
    - foaf:name
    close_mappings:
    - dcterms:title
    - obo:IAO_0000590
    rank: 1000
    alias: name
    owner: XYZGenesis
    domain_of:
    - XYZGenesis
    - XYZAgentRole
    - Instrument
    - Organization
    - Study
    - Subject
    range: string
  part_of:
    name: part_of
    annotations:
      sh:order:
        tag: sh:order
        value: 5.0
    description: The entity that the subject is a part of. A core relation that holds
      between a part and its whole.
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - obo:BFO_0000050
    - dcterms:isPartOf
    - schema:isPartOf
    rank: 1000
    alias: part_of
    owner: XYZGenesis
    domain_of:
    - XYZGenesis
    - XYZPerson
    - XYZProject
    - XYZTopic
    - XYZObjective
    - DataItem
    - Dataset
    - Document
    - Grant
    - Organization
    - Project
    - Study
    range: Thing
    any_of:
    - range: XYZStudy
    - range: XYZGenesis
  target:
    name: target
    annotations:
      sh:order:
        tag: sh:order
        value: 6.0
    description: An objective that is the focus of an activity.
    title: Target
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    related_mappings:
    - obo:BFO_0000055
    rank: 1000
    alias: target
    owner: XYZGenesis
    domain_of:
    - XYZGenesis
    - XYZProject
    - XYZStudy
    range: XYZObjective
    multivalued: true
  used:
    name: used
    annotations:
      sh:order:
        tag: sh:order
        value: 4.0
    description: An entity that was being used by an activity or in a process.
    title: Used
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - prov:used
    rank: 1000
    alias: used
    owner: XYZGenesis
    domain_of:
    - XYZGenesis
    range: Thing
    multivalued: true
    any_of:
    - range: XYZDistribution
    - range: XYZInstrument
  display_label:
    name: display_label
    description: Label that can be shown when the metadata record is displayed as
      an item.
    title: Record display label
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    rank: 1000
    slot_uri: skos:prefLabel
    alias: display_label
    owner: XYZGenesis
    domain_of:
    - XYZPersonAttribution
    - FlatThing
    range: string
  display_note:
    name: display_note
    annotations:
      dash:singleLine:
        tag: dash:singleLine
        value: false
    description: Note that can be shown when the record is displayed as an item. This
      is typically longer than a label.
    title: Record display note
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    rank: 1000
    slot_uri: skos:note
    alias: display_note
    owner: XYZGenesis
    domain_of:
    - FlatThing
    range: string
  editorial_note:
    name: editorial_note
    annotations:
      dash:singleLine:
        tag: dash:singleLine
        value: false
    description: A comment about a metadata record either providing additional information
      for a record curation, or leaving a comment after curation occurred. This can
      be used to include information that is deemed relevant, but could not be expressed
      in the provided fields.
    title: Editorial note
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    rank: 1000
    slot_uri: skos:editorialNote
    alias: editorial_note
    owner: XYZGenesis
    domain_of:
    - FlatThing
    range: string
    multivalued: true
  identifiers:
    name: identifiers
    description: An unambiguous reference to the subject within a given context.
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - dcterms:identifier
    - schema:identifier
    - ADMS:identifier
    rank: 1000
    slot_uri: dlidentifiers:identifier
    alias: identifiers
    owner: XYZGenesis
    domain_of:
    - FlatThing
    range: Identifier
    multivalued: true
    inlined: true
    inlined_as_list: true
  pid:
    name: pid
    annotations:
      sh:order:
        tag: sh:order
        value: 1
    description: Persistent and globally unique identifier of a `Thing`.
    title: Persistent identifier
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - dcterms:identifier
    - schema:identifier
    - ADMS:identifier
    rank: 1000
    slot_uri: dlthings:pid
    identifier: true
    alias: pid
    owner: XYZGenesis
    domain_of:
    - Thing
    range: uriorcurie
    required: true
  relations:
    name: relations
    annotations:
      sh:order:
        tag: sh:order
        value: 6
    description: Declares an unqualified relation of the subject `Thing` to another
      `Thing`. This schema slot is used to define related things inline. If such a
      definition is not needed. A qualified relationship can be declared directly
      using the `characterized_by` slot.
    title: Relations
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - dcat:relation
    - dcterms:relation
    rank: 1000
    domain: Thing
    slot_uri: dlthings:relation
    alias: relations
    owner: XYZGenesis
    domain_of:
    - Thing
    symmetric: true
    relational_role: OBJECT
    range: Thing
    multivalued: true
    inlined: true
    inlined_as_list: false
  annotations:
    name: annotations
    annotations:
      sh:order:
        tag: sh:order
        value: 5
    description: A record of properties of the metadata record on a subject, a collection
      of tag/text tuples with the semantics of OWL Annotation.
    title: Annotations
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - obo:NCIT_C44272
    rank: 1000
    slot_uri: dlthings:annotations
    alias: annotations
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: Annotation
    multivalued: true
    inlined: true
  broad_mappings:
    name: broad_mappings
    annotations:
      sh:order:
        tag: sh:order
        value: 9
    description: A list of terms from different schemas or terminology systems that
      have broader meaning.
    title: Broad mappings
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    rank: 1000
    is_a: mappings
    slot_uri: skos:broadMatch
    alias: broad_mappings
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: uriorcurie
    multivalued: true
  close_mappings:
    name: close_mappings
    annotations:
      sh:order:
        tag: sh:order
        value: 8
    description: A list of terms from different schemas or terminology systems that
      have close meaning.
    title: Close mappings
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    rank: 1000
    is_a: mappings
    slot_uri: skos:closeMatch
    alias: close_mappings
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: uriorcurie
    multivalued: true
  description:
    name: description
    annotations:
      sh:order:
        tag: sh:order
        value: 2.0
      dash:singleLine:
        tag: dash:singleLine
        value: false
    description: A free-text account of the subject.
    title: Description
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - dcterms:description
    - rdfs:comment
    broad_mappings:
    - obo:IAO_0000300
    rank: 1000
    slot_uri: dlthings:description
    alias: description
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: string
  exact_mappings:
    name: exact_mappings
    annotations:
      sh:order:
        tag: sh:order
        value: 7
    description: A list of terms from different schemas or terminology systems that
      have identical meaning.
    title: Exact mappings
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    rank: 1000
    is_a: mappings
    slot_uri: skos:exactMatch
    alias: exact_mappings
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: uriorcurie
    multivalued: true
  attributes:
    name: attributes
    annotations:
      sh:order:
        tag: sh:order
        value: 3
    description: Declares a relation that associates a `Thing` (or another attribute)
      with an attribute, where an attribute is an intrinsic characteristic, such as
      a quality, capability, disposition, function, or is an externally derived attribute
      determined from some descriptor (e.g. a quantity, position, label/identifier).
      Technically, this declaration is done via an `AttributeSpecification` that combines
      a `predicate` with a value declaration and the attribute-related slots of a
      `Thing`. Importantly, such attributes are declared inline, because they do not
      have a unique identifier. If an identifier is available, a `Thing` declaration
      (see `relation`), and a qualification of that relationship via a `Statement`
      (see `characterized_by`) should be preferred.
    title: Attributes
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - sio:SIO_000008
    rank: 1000
    slot_uri: dlthings:attributes
    alias: attributes
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: AttributeSpecification
    multivalued: true
    inlined: true
    inlined_as_list: true
  characterized_by:
    name: characterized_by
    annotations:
      sh:order:
        tag: sh:order
        value: 2
    description: Qualifies relationships between a subject `Thing` and an object `Thing`
      with a `Statement` declaring a `predicate` on the nature of the relationship.
    title: Is characterized by
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - obo:RO_0000053
    rank: 1000
    slot_uri: dlthings:characterized_by
    alias: characterized_by
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: Statement
    multivalued: true
    inlined: true
    inlined_as_list: true
  narrow_mappings:
    name: narrow_mappings
    annotations:
      sh:order:
        tag: sh:order
        value: 10
    description: A list of terms from different schemas or terminology systems that
      have narrower meaning.
    title: Narrow mappings
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    rank: 1000
    is_a: mappings
    slot_uri: skos:narrowMatch
    alias: narrow_mappings
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: uriorcurie
    multivalued: true
  related_mappings:
    name: related_mappings
    annotations:
      sh:order:
        tag: sh:order
        value: 11
    description: A list of terms from different schemas or terminology systems that
      have related meaning.
    title: Related mappings
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    rank: 1000
    is_a: mappings
    slot_uri: skos:relatedMatch
    alias: related_mappings
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: uriorcurie
    multivalued: true
  schema_type:
    name: schema_type
    description: State that the subject is an instance of a particular schema class.
      Typically, no explicit value needs to be assigned to this slot, because it matches
      the class type of a particular record. However, this slots can be used as a
      type designator of a schema element for validation and schema structure handling
      purposes. This is used to indicate specialized schema classes for properties
      that accept a hierarchy of classes as their range.
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - dcterms:type
    rank: 1000
    slot_uri: rdf:type
    designates_type: true
    alias: schema_type
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    - Identifier
    range: NodeUriOrCurie