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Class: Genesis (XYZGenesis)

A process in which an entity comes into being as a result of the process.

URI: xyzra:XYZGenesis

erDiagram Annotation { string annotation_value } AttributeSpecification { uriorcurieList broad_mappings uriorcurieList close_mappings string description uriorcurieList exact_mappings uriorcurieList narrow_mappings uriorcurieList related_mappings NodeUriOrCurie schema_type uriorcurie range string value } Identifier { uriorcurie creator string notation NodeUriOrCurie schema_type } Property { uriorcurie pid uriorcurieList broad_mappings uriorcurieList close_mappings string description uriorcurieList exact_mappings uriorcurieList narrow_mappings uriorcurieList related_mappings NodeUriOrCurie schema_type } Statement { } Thing { uriorcurie pid uriorcurieList broad_mappings uriorcurieList close_mappings string description uriorcurieList exact_mappings uriorcurieList narrow_mappings uriorcurieList related_mappings NodeUriOrCurie schema_type } XYZConvention { string title string short_name string display_label string display_note stringList editorial_note uriorcurie pid uriorcurieList broad_mappings uriorcurieList close_mappings string description uriorcurieList exact_mappings uriorcurieList narrow_mappings uriorcurieList related_mappings NodeUriOrCurie schema_type } XYZGenesis { string name string display_label string display_note stringList editorial_note uriorcurie pid uriorcurieList broad_mappings uriorcurieList close_mappings string description uriorcurieList exact_mappings uriorcurieList narrow_mappings uriorcurieList related_mappings NodeUriOrCurie schema_type } XYZObjective { string title string display_label string display_note stringList editorial_note uriorcurie pid uriorcurieList broad_mappings uriorcurieList close_mappings string description uriorcurieList exact_mappings uriorcurieList narrow_mappings uriorcurieList related_mappings NodeUriOrCurie schema_type } XYZPersonAttribution { string display_label } XYZProject { string short_name string title string display_label string display_note stringList editorial_note uriorcurie pid uriorcurieList broad_mappings uriorcurieList close_mappings string description uriorcurieList exact_mappings uriorcurieList narrow_mappings uriorcurieList related_mappings NodeUriOrCurie schema_type } Annotation ||--|o Thing : "annotation_tag" AttributeSpecification ||--|| Property : "predicate" AttributeSpecification ||--}o Annotation : "annotations" AttributeSpecification ||--}o AttributeSpecification : "attributes" AttributeSpecification ||--}o Statement : "characterized_by" Property ||--}o Annotation : "annotations" Property ||--}o AttributeSpecification : "attributes" Property ||--}o Statement : "characterized_by" Property ||--}o Thing : "relations" Statement ||--|| Property : "predicate" Statement ||--|| Thing : "object" Thing ||--}o Annotation : "annotations" Thing ||--}o AttributeSpecification : "attributes" Thing ||--}o Statement : "characterized_by" Thing ||--}o Thing : "relations" XYZConvention ||--}o Annotation : "annotations" XYZConvention ||--}o AttributeSpecification : "attributes" XYZConvention ||--}o Identifier : "identifiers" XYZConvention ||--}o Statement : "characterized_by" XYZConvention ||--}o Thing : "relations" XYZGenesis ||--|o Thing : "part_of" XYZGenesis ||--|o XYZGenesis : "kind" XYZGenesis ||--}o Annotation : "annotations" XYZGenesis ||--}o AttributeSpecification : "attributes" XYZGenesis ||--}o Identifier : "identifiers" XYZGenesis ||--}o Statement : "characterized_by" XYZGenesis ||--}o Thing : "relations" XYZGenesis ||--}o Thing : "used" XYZGenesis ||--}o XYZConvention : "conforms_to" XYZGenesis ||--}o XYZObjective : "target" XYZObjective ||--|o XYZProject : "part_of" XYZObjective ||--}o Annotation : "annotations" XYZObjective ||--}o AttributeSpecification : "attributes" XYZObjective ||--}o Identifier : "identifiers" XYZObjective ||--}o Statement : "characterized_by" XYZObjective ||--}o Thing : "relations" XYZObjective ||--}o XYZObjective : "depends_on" XYZObjective ||--}o XYZPersonAttribution : "attributed_to" XYZPersonAttribution ||--|o XYZPerson : "object" XYZPersonAttribution ||--}o XYZAgentRole : "roles" XYZProject ||--|o XYZProject : "part_of" XYZProject ||--}o Annotation : "annotations" XYZProject ||--}o AttributeSpecification : "attributes" XYZProject ||--}o Identifier : "identifiers" XYZProject ||--}o Statement : "characterized_by" XYZProject ||--}o Thing : "relations" XYZProject ||--}o XYZObjective : "target" XYZProject ||--}o XYZPersonAttribution : "attributed_to"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
conforms_to *
XYZConvention
An established standard to which the subject conforms direct
kind 0..1
XYZGenesis
The nature of the subject direct
name 0..1
String
Name of the subject direct
part_of 0..1
Thing or 
XYZStudy or 
XYZGenesis
The entity that the subject is a part of direct
target *
XYZObjective
An objective that is the focus of an activity direct
used *
Thing or 
XYZDistribution or 
XYZInstrument
Usage is the beginning of utilizing an entity by an activity direct
display_label 0..1
String
Label that can be shown when the metadata record is displayed as an item FlatThing
display_note 0..1
String
Note that can be shown when the record is displayed as an item FlatThing
editorial_note *
String
A comment about a metadata record either providing additional information for... FlatThing
identifiers *
Identifier
An unambiguous reference to the subject within a given context FlatThing
pid 1
Uriorcurie
Persistent and globally unique identifier of a Thing Thing
relations *
Thing
Declares an unqualified relation of the subject Thing to another Thing Thing
annotations *
Annotation
A record of properties of the metadata record on a subject, a collection of t... ThingMixin
broad_mappings *
Uriorcurie
A list of terms from different schemas or terminology systems that have broad... ThingMixin
close_mappings *
Uriorcurie
A list of terms from different schemas or terminology systems that have close... ThingMixin
description 0..1
String
A free-text account of the subject ThingMixin
exact_mappings *
Uriorcurie
A list of terms from different schemas or terminology systems that have ident... ThingMixin
attributes *
AttributeSpecification
Declares a relation that associates a Thing (or another attribute) with an ... ThingMixin
characterized_by *
Statement
Qualifies relationships between a subject Thing and an object Thing with ... ThingMixin
narrow_mappings *
Uriorcurie
A list of terms from different schemas or terminology systems that have narro... ThingMixin
related_mappings *
Uriorcurie
A list of terms from different schemas or terminology systems that have relat... ThingMixin
schema_type 0..1
NodeUriOrCurie
State that the subject is an instance of a particular schema class ThingMixin

Usages

used by used in type used
XYZGenesis kind range XYZGenesis
XYZGenesis part_of any_of[range] XYZGenesis
XYZGeneration object range XYZGenesis

Comments

  • This class is intended to cover generative processes and activities, while Study covers investigational (scientific) activities, and Project covers organizational activities.

Identifier and Mapping Information

Schema Source

  • from schema: https://concepts.datalad.org/s/demo-research-assets/unreleased

Mappings

Mapping Type Mapped Value
self xyzra:XYZGenesis
native xyzra:XYZGenesis
exact obo:NCIT_C48151, obo:IDO_0000607
broad obo:BFO_0000015, prov:Activity

Examples

Example: XYZGenesis-02-attributes

pid: https://example.org/bpm-1
name: blood pressure measurement (children)
conforms_to:
  - doi:10.1111/j.1524-6175.2005.04377.x
used:
  # Blood pressure cuff, pediatric size (physical object)
  - http://snomed.info/id/720736009
broad_mappings:
  # blood pressure measurement
  - obo:MAXO_0000494

LinkML Source

Direct

name: XYZGenesis
description: A process in which an entity comes into being as a result of the process.
title: Genesis
comments:
- This class is intended to cover generative processes and activities, while `Study`
  covers investigational (scientific) activities, and `Project` covers organizational
  activities.
from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
exact_mappings:
- obo:NCIT_C48151
- obo:IDO_0000607
broad_mappings:
- obo:BFO_0000015
- prov:Activity
is_a: FlatThing
slots:
- conforms_to
- kind
- name
- part_of
- target
- used
slot_usage:
  name:
    name: name
    annotations:
      sh:order:
        tag: sh:order
        value: 1.0
  kind:
    name: kind
    annotations:
      sh:order:
        tag: sh:order
        value: 2.0
      dash:singleLine:
        tag: dash:singleLine
        value: false
    range: XYZGenesis
  conforms_to:
    name: conforms_to
    annotations:
      sh:order:
        tag: sh:order
        value: 3.0
    range: XYZConvention
    multivalued: true
  used:
    name: used
    annotations:
      sh:order:
        tag: sh:order
        value: 4.0
    multivalued: true
    any_of:
    - range: XYZDistribution
    - range: XYZInstrument
  part_of:
    name: part_of
    annotations:
      sh:order:
        tag: sh:order
        value: 5.0
    any_of:
    - range: XYZStudy
    - range: XYZGenesis
  target:
    name: target
    annotations:
      sh:order:
        tag: sh:order
        value: 6.0
    multivalued: true
  description:
    name: description
    annotations:
      sh:order:
        tag: sh:order
        value: 7.0
      dash:singleLine:
        tag: dash:singleLine
        value: false

Induced

name: XYZGenesis
description: A process in which an entity comes into being as a result of the process.
title: Genesis
comments:
- This class is intended to cover generative processes and activities, while `Study`
  covers investigational (scientific) activities, and `Project` covers organizational
  activities.
from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
exact_mappings:
- obo:NCIT_C48151
- obo:IDO_0000607
broad_mappings:
- obo:BFO_0000015
- prov:Activity
is_a: FlatThing
slot_usage:
  name:
    name: name
    annotations:
      sh:order:
        tag: sh:order
        value: 1.0
  kind:
    name: kind
    annotations:
      sh:order:
        tag: sh:order
        value: 2.0
      dash:singleLine:
        tag: dash:singleLine
        value: false
    range: XYZGenesis
  conforms_to:
    name: conforms_to
    annotations:
      sh:order:
        tag: sh:order
        value: 3.0
    range: XYZConvention
    multivalued: true
  used:
    name: used
    annotations:
      sh:order:
        tag: sh:order
        value: 4.0
    multivalued: true
    any_of:
    - range: XYZDistribution
    - range: XYZInstrument
  part_of:
    name: part_of
    annotations:
      sh:order:
        tag: sh:order
        value: 5.0
    any_of:
    - range: XYZStudy
    - range: XYZGenesis
  target:
    name: target
    annotations:
      sh:order:
        tag: sh:order
        value: 6.0
    multivalued: true
  description:
    name: description
    annotations:
      sh:order:
        tag: sh:order
        value: 7.0
      dash:singleLine:
        tag: dash:singleLine
        value: false
attributes:
  conforms_to:
    name: conforms_to
    annotations:
      sh:order:
        tag: sh:order
        value: 3.0
    description: An established standard to which the subject conforms.
    comments:
    - This property SHOULD be used to indicate a model, schema, ontology, view or
      profile that the subject conforms to.
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - dcterms:conformsTo
    rank: 1000
    alias: conforms_to
    owner: XYZGenesis
    domain_of:
    - XYZDistribution
    - XYZGenesis
    range: XYZConvention
    multivalued: true
  kind:
    name: kind
    annotations:
      sh:order:
        tag: sh:order
        value: 2.0
      dash:singleLine:
        tag: dash:singleLine
        value: false
    description: The nature of the subject.
    comments:
    - This is conceptually the same as an instance-level `broad_mappings`. It can
      make sense to use this slot (in addition) in order to enable straightforward
      type declarations for instances from a controlled, application specific vocabulary,
      while also keeping the ability to use `broad_mappings` for alignment with external
      vocabularies and applications.
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - dcterms:type
    rank: 1000
    alias: kind
    owner: XYZGenesis
    domain_of:
    - XYZGenesis
    - XYZPublicationVenue
    - Distribution
    - Publication
    - DataItem
    - Document
    - Instrument
    - Subject
    range: XYZGenesis
  name:
    name: name
    annotations:
      sh:order:
        tag: sh:order
        value: 1.0
    description: Name of the subject. A name is closely related to a `title`, but
      often more compact and identifier-like, but without the implication of uniqueness
      of an identifier. A name is often used by technical systems to display an item
      in an organizational structure, such as a file in a directory hierarchy.
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - rdfs:label
    - schema:name
    - foaf:name
    close_mappings:
    - dcterms:title
    - obo:IAO_0000590
    rank: 1000
    alias: name
    owner: XYZGenesis
    domain_of:
    - XYZGenesis
    - XYZAgentRole
    - Instrument
    - Organization
    - Study
    - Subject
    range: string
  part_of:
    name: part_of
    annotations:
      sh:order:
        tag: sh:order
        value: 5.0
    description: The entity that the subject is a part of. A core relation that holds
      between a part and its whole.
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - obo:BFO_0000050
    - dcterms:isPartOf
    - schema:isPartOf
    rank: 1000
    alias: part_of
    owner: XYZGenesis
    domain_of:
    - XYZGenesis
    - XYZPerson
    - XYZProject
    - XYZTopic
    - XYZObjective
    - DataItem
    - Dataset
    - Document
    - Grant
    - Organization
    - Project
    - Study
    range: Thing
    any_of:
    - range: XYZStudy
    - range: XYZGenesis
  target:
    name: target
    annotations:
      sh:order:
        tag: sh:order
        value: 6.0
    description: An objective that is the focus of an activity.
    title: Target
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    related_mappings:
    - obo:BFO_0000055
    rank: 1000
    alias: target
    owner: XYZGenesis
    domain_of:
    - XYZGenesis
    - XYZProject
    - XYZStudy
    range: XYZObjective
    multivalued: true
  used:
    name: used
    annotations:
      sh:order:
        tag: sh:order
        value: 4.0
    description: Usage is the beginning of utilizing an entity by an activity. Before
      usage, the activity had not begun to utilize this entity and could not have
      been affected by the entity.
    title: Used
    notes:
    - PROV-O "used" is a short-cut property. "Usage" also has "entity".
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - prov:used
    rank: 1000
    alias: used
    owner: XYZGenesis
    domain_of:
    - XYZGenesis
    - XYZGeneration
    - ActivityMixin
    - Derivation
    range: Thing
    multivalued: true
    any_of:
    - range: XYZDistribution
    - range: XYZInstrument
  display_label:
    name: display_label
    description: Label that can be shown when the metadata record is displayed as
      an item.
    title: Record display label
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    rank: 1000
    slot_uri: skos:prefLabel
    alias: display_label
    owner: XYZGenesis
    domain_of:
    - XYZPersonAttribution
    - FlatThing
    range: string
  display_note:
    name: display_note
    annotations:
      dash:singleLine:
        tag: dash:singleLine
        value: false
    description: Note that can be shown when the record is displayed as an item. This
      is typically longer than a label.
    title: Record display note
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    rank: 1000
    slot_uri: skos:note
    alias: display_note
    owner: XYZGenesis
    domain_of:
    - FlatThing
    range: string
  editorial_note:
    name: editorial_note
    annotations:
      dash:singleLine:
        tag: dash:singleLine
        value: false
    description: A comment about a metadata record either providing additional information
      for a record curation, or leaving a comment after curation occurred. This can
      be used to include information that is deemed relevant, but could not be expressed
      in the provided fields.
    title: Editorial note
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    rank: 1000
    slot_uri: skos:editorialNote
    alias: editorial_note
    owner: XYZGenesis
    domain_of:
    - FlatThing
    range: string
    multivalued: true
  identifiers:
    name: identifiers
    description: An unambiguous reference to the subject within a given context.
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - dcterms:identifier
    - schema:identifier
    - ADMS:identifier
    rank: 1000
    slot_uri: dlidentifiers:identifier
    alias: identifiers
    owner: XYZGenesis
    domain_of:
    - FlatThing
    range: Identifier
    multivalued: true
    inlined: true
    inlined_as_list: true
  pid:
    name: pid
    annotations:
      sh:order:
        tag: sh:order
        value: 1
    description: Persistent and globally unique identifier of a `Thing`.
    title: Persistent identifier
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - dcterms:identifier
    - schema:identifier
    - ADMS:identifier
    rank: 1000
    slot_uri: dlthings:pid
    identifier: true
    alias: pid
    owner: XYZGenesis
    domain_of:
    - Thing
    range: uriorcurie
    required: true
  relations:
    name: relations
    annotations:
      sh:order:
        tag: sh:order
        value: 6
    description: Declares an unqualified relation of the subject `Thing` to another
      `Thing`. This schema slot is used to define related things inline. If such a
      definition is not needed. A qualified relationship can be declared directly
      using the `characterized_by` slot.
    title: Relations
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - dcat:relation
    - dcterms:relation
    rank: 1000
    domain: Thing
    slot_uri: dlthings:relation
    alias: relations
    owner: XYZGenesis
    domain_of:
    - Thing
    symmetric: true
    relational_role: OBJECT
    range: Thing
    multivalued: true
    inlined: true
    inlined_as_list: false
  annotations:
    name: annotations
    annotations:
      sh:order:
        tag: sh:order
        value: 5
    description: A record of properties of the metadata record on a subject, a collection
      of tag/text tuples with the semantics of OWL Annotation.
    title: Annotations
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - obo:NCIT_C44272
    rank: 1000
    slot_uri: dlthings:annotations
    alias: annotations
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: Annotation
    multivalued: true
    inlined: true
  broad_mappings:
    name: broad_mappings
    annotations:
      sh:order:
        tag: sh:order
        value: 9
    description: A list of terms from different schemas or terminology systems that
      have broader meaning.
    title: Broad mappings
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    rank: 1000
    is_a: mappings
    slot_uri: skos:broadMatch
    alias: broad_mappings
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: uriorcurie
    multivalued: true
  close_mappings:
    name: close_mappings
    annotations:
      sh:order:
        tag: sh:order
        value: 8
    description: A list of terms from different schemas or terminology systems that
      have close meaning.
    title: Close mappings
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    rank: 1000
    is_a: mappings
    slot_uri: skos:closeMatch
    alias: close_mappings
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: uriorcurie
    multivalued: true
  description:
    name: description
    annotations:
      sh:order:
        tag: sh:order
        value: 7.0
      dash:singleLine:
        tag: dash:singleLine
        value: false
    description: A free-text account of the subject.
    title: Description
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - dcterms:description
    - rdfs:comment
    broad_mappings:
    - obo:IAO_0000300
    rank: 1000
    slot_uri: dlthings:description
    alias: description
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: string
  exact_mappings:
    name: exact_mappings
    annotations:
      sh:order:
        tag: sh:order
        value: 7
    description: A list of terms from different schemas or terminology systems that
      have identical meaning.
    title: Exact mappings
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    rank: 1000
    is_a: mappings
    slot_uri: skos:exactMatch
    alias: exact_mappings
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: uriorcurie
    multivalued: true
  attributes:
    name: attributes
    annotations:
      sh:order:
        tag: sh:order
        value: 3
    description: Declares a relation that associates a `Thing` (or another attribute)
      with an attribute, where an attribute is an intrinsic characteristic, such as
      a quality, capability, disposition, function, or is an externally derived attribute
      determined from some descriptor (e.g. a quantity, position, label/identifier).
      Technically, this declaration is done via an `AttributeSpecification` that combines
      a `predicate` with a value declaration and the attribute-related slots of a
      `Thing`. Importantly, such attributes are declared inline, because they do not
      have a unique identifier. If an identifier is available, a `Thing` declaration
      (see `relation`), and a qualification of that relationship via a `Statement`
      (see `characterized_by`) should be preferred.
    title: Attributes
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - sio:SIO_000008
    rank: 1000
    slot_uri: dlthings:attributes
    alias: attributes
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: AttributeSpecification
    multivalued: true
    inlined: true
    inlined_as_list: true
  characterized_by:
    name: characterized_by
    annotations:
      sh:order:
        tag: sh:order
        value: 2
    description: Qualifies relationships between a subject `Thing` and an object `Thing`
      with a `Statement` declaring a `predicate` on the nature of the relationship.
    title: Is characterized by
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - obo:RO_0000053
    rank: 1000
    slot_uri: dlthings:characterized_by
    alias: characterized_by
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: Statement
    multivalued: true
    inlined: true
    inlined_as_list: true
  narrow_mappings:
    name: narrow_mappings
    annotations:
      sh:order:
        tag: sh:order
        value: 10
    description: A list of terms from different schemas or terminology systems that
      have narrower meaning.
    title: Narrow mappings
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    rank: 1000
    is_a: mappings
    slot_uri: skos:narrowMatch
    alias: narrow_mappings
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: uriorcurie
    multivalued: true
  related_mappings:
    name: related_mappings
    annotations:
      sh:order:
        tag: sh:order
        value: 11
    description: A list of terms from different schemas or terminology systems that
      have related meaning.
    title: Related mappings
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    rank: 1000
    is_a: mappings
    slot_uri: skos:relatedMatch
    alias: related_mappings
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    range: uriorcurie
    multivalued: true
  schema_type:
    name: schema_type
    description: State that the subject is an instance of a particular schema class.
      Typically, no explicit value needs to be assigned to this slot, because it matches
      the class type of a particular record. However, this slots can be used as a
      type designator of a schema element for validation and schema structure handling
      purposes. This is used to indicate specialized schema classes for properties
      that accept a hierarchy of classes as their range.
    from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased
    exact_mappings:
    - dcterms:type
    rank: 1000
    slot_uri: rdf:type
    designates_type: true
    alias: schema_type
    owner: XYZGenesis
    domain_of:
    - ThingMixin
    - Identifier
    range: NodeUriOrCurie