name: demo-research-assets-schema description: 'This schema is using the FLAT approach (Flexible Low-complexity Annotation Technique) and is geared toward metadata entry and submission for pooling information across consortium sites and partners. It is to be taken as a demonstrator rather than a schema building block. More information may be available on the schema''s [about page](about). The schema definition is available as - [JSON-LD context](../unreleased.context.jsonld) - [LinkML YAML](../unreleased.yaml) - [LinkML YAML (static/resolved)](../unreleased.static.yaml) - [OWL TTL](../unreleased.owl.ttl) - [SHACL TTL](../unreleased.shacl.ttl) ' title: Data models for an organization's research assets comments: - ALL CONTENT HERE IS UNRELEASED AND MAY CHANGE ANY TIME status: eunal:concept-status/DRAFT id: https://concepts.datalad.org/s/demo-research-assets/unreleased version: UNRELEASED license: MIT prefixes: ADMS: prefix_prefix: ADMS prefix_reference: http://www.w3.org/ns/adms# ISSN: prefix_prefix: ISSN prefix_reference: http://identifiers.org/issn/ ODRL: prefix_prefix: ODRL prefix_reference: http://www.w3.org/ns/odrl/2/ bibo: prefix_prefix: bibo prefix_reference: http://purl.org/ontology/bibo/ datalad: prefix_prefix: datalad prefix_reference: https://pid.datalad.org/datasets/ dash: prefix_prefix: dash prefix_reference: http://datashapes.org/dash# dcterms: prefix_prefix: dcterms prefix_reference: http://purl.org/dc/terms/ dlcommonmx: prefix_prefix: dlcommonmx prefix_reference: https://concepts.datalad.org/s/common-mixin/unreleased/ dldi: prefix_prefix: dldi prefix_reference: https://pid.datalad.org/distributions/ dlcdi: prefix_prefix: dlcdi prefix_reference: https://concepts.datalad.org/ns/content-defined-identifiers/ dlfilesmx: prefix_prefix: dlfilesmx prefix_reference: https://concepts.datalad.org/s/files-mixin/unreleased/ dlflat: prefix_prefix: dlflat prefix_reference: https://concepts.datalad.org/s/flat/unreleased/ dlflatfiles: prefix_prefix: dlflatfiles prefix_reference: https://concepts.datalad.org/s/flat-files/unreleased/ dlflatpublications: prefix_prefix: dlflatpublications prefix_reference: https://concepts.datalad.org/s/flat-publications/unreleased/ dlflatres: prefix_prefix: dlflatres prefix_reference: https://concepts.datalad.org/s/flat-resources/unreleased/ dlflatsocial: prefix_prefix: dlflatsocial prefix_reference: https://concepts.datalad.org/s/flat-social/unreleased/ dlflatstudy: prefix_prefix: dlflatstudy prefix_reference: https://concepts.datalad.org/s/flat-study/unreleased/ dlidentifiers: prefix_prefix: dlidentifiers prefix_reference: https://concepts.datalad.org/s/identifiers/unreleased/ dlprovmx: prefix_prefix: dlprovmx prefix_reference: https://concepts.datalad.org/s/prov-mixin/unreleased/ dlpublicationsmx: prefix_prefix: dlpublicationsmx prefix_reference: https://concepts.datalad.org/s/publications-mixin/unreleased/ dlquantmx: prefix_prefix: dlquantmx prefix_reference: https://concepts.datalad.org/s/quantities-mixin/unreleased/ dlrelationsmx: prefix_prefix: dlrelationsmx prefix_reference: https://concepts.datalad.org/s/relations-mixin/unreleased/ dlresmx: prefix_prefix: dlresmx prefix_reference: https://concepts.datalad.org/s/resources-mixin/unreleased/ dlschemas: prefix_prefix: dlschemas prefix_reference: https://concepts.datalad.org/s/ dlsocialmx: prefix_prefix: dlsocialmx prefix_reference: https://concepts.datalad.org/s/social-mixin/unreleased/ dlspatialmx: prefix_prefix: dlspatialmx prefix_reference: https://concepts.datalad.org/s/spatial-mixin/unreleased/ dlstudymx: prefix_prefix: dlstudymx prefix_reference: https://concepts.datalad.org/s/study-mixin/unreleased/ dltemporalmx: prefix_prefix: dltemporalmx prefix_reference: https://concepts.datalad.org/s/temporal-mixin/unreleased/ dlthings: prefix_prefix: dlthings prefix_reference: https://concepts.datalad.org/s/things/v1/ dltypes: prefix_prefix: dltypes prefix_reference: https://concepts.datalad.org/s/types/v1/ dlvocab: prefix_prefix: dlvocab prefix_reference: https://concepts.datalad.org/vocab/ doi: prefix_prefix: doi prefix_reference: https://doi.org/ eunal: prefix_prefix: eunal prefix_reference: http://publications.europa.eu/resource/authority/ geodata: prefix_prefix: geodata prefix_reference: http://sws.geonames.org/ linkml: prefix_prefix: linkml prefix_reference: https://w3id.org/linkml/ marcrel: prefix_prefix: marcrel prefix_reference: http://id.loc.gov/vocabulary/relators/ nfo: prefix_prefix: nfo prefix_reference: http://www.semanticdesktop.org/ontologies/2007/03/22/nfo# obo: prefix_prefix: obo prefix_reference: http://purl.obolibrary.org/obo/ orcid: prefix_prefix: orcid prefix_reference: https://orcid.org/ owl: prefix_prefix: owl prefix_reference: http://www.w3.org/2002/07/owl# prov: prefix_prefix: prov prefix_reference: http://www.w3.org/ns/prov# rdf: prefix_prefix: rdf prefix_reference: http://www.w3.org/1999/02/22-rdf-syntax-ns# rdfs: prefix_prefix: rdfs prefix_reference: http://www.w3.org/2000/01/rdf-schema# ror: prefix_prefix: ror prefix_reference: https://ror.org/ rrid: prefix_prefix: rrid prefix_reference: 'https://scicrunch.org/resolver/RRID:' schema: prefix_prefix: schema prefix_reference: http://schema.org/ sh: prefix_prefix: sh prefix_reference: http://www.w3.org/ns/shacl# sio: prefix_prefix: sio prefix_reference: http://semanticscience.org/resource/ skos: prefix_prefix: skos prefix_reference: http://www.w3.org/2004/02/skos/core# spdx: prefix_prefix: spdx prefix_reference: http://spdx.org/rdf/terms# vcard: prefix_prefix: vcard prefix_reference: http://www.w3.org/2006/vcard/ns# w3ctr: prefix_prefix: w3ctr prefix_reference: https://www.w3.org/TR/ xsd: prefix_prefix: xsd prefix_reference: http://www.w3.org/2001/XMLSchema# xyzra: prefix_prefix: xyzra prefix_reference: https://concepts.datalad.org/s/demo-research-assets/unreleased/ xyzrans: prefix_prefix: xyzrans prefix_reference: https://concepts.datalad.org/s/demo-research-assets/ns/ dcat: prefix_prefix: dcat prefix_reference: http://www.w3.org/ns/dcat# foaf: prefix_prefix: foaf prefix_reference: http://xmlns.com/foaf/0.1/ pq: prefix_prefix: pq prefix_reference: http://www.wikidata.org/prop/qualifier/ ex: prefix_prefix: ex prefix_reference: http://example.org/ exthisns: prefix_prefix: exthisns prefix_reference: https://example.org/ns/ fabio: prefix_prefix: fabio prefix_reference: http://purl.org/spar/fabio/ shex: prefix_prefix: shex prefix_reference: http://www.w3.org/ns/shex# FRAPO: prefix_prefix: FRAPO prefix_reference: http://purl.org/cerif/frapo/ emit_prefixes: - dlcommonmx - dlfilesmx - dlflat - dlflatfiles - dlflatres - dlflatpublications - dlflatsocial - dlflatstudy - dlidentifiers - dlprovmx - dlpublicationsmx - dlquantmx - dlrelationsmx - dlresmx - dlspatialmx - dlsocialmx - dlstudymx - dltemporalmx - dlthings - dltypes - rdf - rdfs - skos - w3ctr - xsd - ISSN - bibo - datalad - dcterms - dldi - doi - geodata - obo - orcid - ror - rrid - schema - xyzrans default_prefix: xyzra types: flexdate: name: flexdate description: W3C variant/subset of IS08601 for specifying date(times). Supported are - YYYY (eg 1997) - YYYY-MM (eg 1997-07) - YYYY-MM-DD (eg 1997-07-16) from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased typeof: string base: str uri: xyzra:flexdate pattern: ^([-+]\d+)|(\d{4})|(\d{4}-[01]\d)|(\d{4}-[01]\d-[0-3]\d)$ W3CISO8601: name: W3CISO8601 description: W3C variant/subset of IS08601 for specifying date(times). Supported are - YYYY (eg 1997) - YYYY-MM (eg 1997-07) - YYYY-MM-DD (eg 1997-07-16) - YYYY-MM-DDThh:mmTZD (eg 1997-07-16T19:20+01:00) - YYYY-MM-DDThh:mm:ssTZD (eg 1997-07-16T19:20:30+01:00) - YYYY-MM-DDThh:mm:ss.sTZD (eg 1997-07-16T19:20:30.45+01:00) where TZD is the time zone designator (Z or +hh:mm or -hh:mm) from_schema: https://concepts.datalad.org/s/temporal-mixin/unreleased see_also: - https://www.w3.org/TR/NOTE-datetime typeof: string base: str uri: w3ctr:NOTE-datetime pattern: ^([-+]\d+)|(\d{4})|(\d{4}-[01]\d)|(\d{4}-[01]\d-[0-3]\d)|(\d{4}-[01]\d-[0-3]\dT[0-2]\d:[0-5]\d:[0-5]\d\.\d+([+-][0-2]\d:[0-5]\d|Z))|(\d{4}-[01]\d-[0-3]\dT[0-2]\d:[0-5]\d:[0-5]\d([+-][0-2]\d:[0-5]\d|Z))|(\d{4}-[01]\d-[0-3]\dT[0-2]\d:[0-5]\d([+-][0-2]\d:[0-5]\d|Z))$ EmailAddress: name: EmailAddress description: RFC 5322 compliant email address notes: - The validation regex is taken from https://stackoverflow.com/a/201378 - The regex is single-quoted for YAML encoding, hence all inner "'" have been doubled from_schema: https://concepts.datalad.org/s/types/v1 typeof: string base: str uri: dltypes:EmailAddress pattern: (?:[A-Za-z0-9!#$%&'*+/=?^_`{|}~-]+(?:\.[A-Za-z0-9!#$%&'*+/=?^_`{|}~-]+)*|"(?:[\x01-\x08\x0b\x0c\x0e-\x1f\x21\x23-\x5b\x5d-\x7f]|\\[\x01-\x09\x0b\x0c\x0e-\x7f])*")@(?:(?:[A-Za-z0-9](?:[A-Za-z0-9-]*[A-Za-z0-9])?\.)+[A-Za-z0-9](?:[A-Za-z0-9-]*[A-Za-z0-9])?|\[(?:(?:(2(5[0-5]|[0-4][0-9])|1[0-9][0-9]|[1-9]?[0-9]))\.){3}(?:(2(5[0-5]|[0-4][0-9])|1[0-9][0-9]|[1-9]?[0-9])|[A-Za-z0-9-]*[A-Za-z0-9]:(?:[\x01-\x08\x0b\x0c\x0e-\x1f\x21-\x5a\x53-\x7f]|\\[\x01-\x09\x0b\x0c\x0e-\x7f])+)\]) HexBinary: name: HexBinary description: hex-encoded binary data. from_schema: https://concepts.datalad.org/s/types/v1 typeof: string base: str uri: xsd:hexBinary pattern: ^[a-fA-F0-9]+$ NodeUriOrCurie: name: NodeUriOrCurie description: A type referencing an graph node. This is like `uriorcurie`, but in an RDF export leads to the desirable `rdf.type` declaration, rather then an `rdf.literal` of the corresponding URI. from_schema: https://concepts.datalad.org/s/types/v1 typeof: uriorcurie base: str uri: rdfs:Resource NonNegativeInteger: name: NonNegativeInteger description: An integer notes: - Integer with minimum (inclusive) value of zero, i.e. the standard mathematical concept of the non-negative integers. from_schema: https://concepts.datalad.org/s/types/v1 broad_mappings: - schema:Integer typeof: integer base: int uri: xsd:nonNegativeInteger string: name: string description: A character string notes: - In RDF serializations, a slot with range of string is treated as a literal or type xsd:string. If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "string". from_schema: https://w3id.org/linkml/types exact_mappings: - schema:Text base: str uri: xsd:string integer: name: integer description: An integer notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "integer". from_schema: https://w3id.org/linkml/types exact_mappings: - schema:Integer base: int uri: xsd:integer boolean: name: boolean description: A binary (true or false) value notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "boolean". from_schema: https://w3id.org/linkml/types exact_mappings: - schema:Boolean base: Bool uri: xsd:boolean repr: bool float: name: float description: A real number that conforms to the xsd:float specification notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "float". from_schema: https://w3id.org/linkml/types exact_mappings: - schema:Float base: float uri: xsd:float double: name: double description: A real number that conforms to the xsd:double specification notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "double". from_schema: https://w3id.org/linkml/types close_mappings: - schema:Float base: float uri: xsd:double decimal: name: decimal description: A real number with arbitrary precision that conforms to the xsd:decimal specification notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "decimal". from_schema: https://w3id.org/linkml/types broad_mappings: - schema:Number base: Decimal uri: xsd:decimal time: name: time description: A time object represents a (local) time of day, independent of any particular day notes: - URI is dateTime because OWL reasoners do not work with straight date or time - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "time". from_schema: https://w3id.org/linkml/types exact_mappings: - schema:Time base: XSDTime uri: xsd:time repr: str date: name: date description: a date (year, month and day) in an idealized calendar notes: - URI is dateTime because OWL reasoners don't work with straight date or time - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "date". from_schema: https://w3id.org/linkml/types exact_mappings: - schema:Date base: XSDDate uri: xsd:date repr: str datetime: name: datetime description: The combination of a date and time notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "datetime". from_schema: https://w3id.org/linkml/types exact_mappings: - schema:DateTime base: XSDDateTime uri: xsd:dateTime repr: str date_or_datetime: name: date_or_datetime description: Either a date or a datetime notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "date_or_datetime". from_schema: https://w3id.org/linkml/types base: str uri: linkml:DateOrDatetime repr: str uriorcurie: name: uriorcurie description: a URI or a CURIE notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "uriorcurie". from_schema: https://w3id.org/linkml/types base: URIorCURIE uri: xsd:anyURI repr: str curie: name: curie conforms_to: https://www.w3.org/TR/curie/ description: a compact URI notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "curie". comments: - in RDF serializations this MUST be expanded to a URI - in non-RDF serializations MAY be serialized as the compact representation from_schema: https://w3id.org/linkml/types base: Curie uri: xsd:string repr: str uri: name: uri conforms_to: https://www.ietf.org/rfc/rfc3987.txt description: a complete URI notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "uri". comments: - in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node from_schema: https://w3id.org/linkml/types close_mappings: - schema:URL base: URI uri: xsd:anyURI repr: str ncname: name: ncname description: Prefix part of CURIE notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "ncname". from_schema: https://w3id.org/linkml/types base: NCName uri: xsd:string repr: str objectidentifier: name: objectidentifier description: A URI or CURIE that represents an object in the model. notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "objectidentifier". comments: - Used for inheritance and type checking from_schema: https://w3id.org/linkml/types base: ElementIdentifier uri: shex:iri repr: str nodeidentifier: name: nodeidentifier description: A URI, CURIE or BNODE that represents a node in a model. notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "nodeidentifier". from_schema: https://w3id.org/linkml/types base: NodeIdentifier uri: shex:nonLiteral repr: str jsonpointer: name: jsonpointer conforms_to: https://datatracker.ietf.org/doc/html/rfc6901 description: A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "jsonpointer". from_schema: https://w3id.org/linkml/types base: str uri: xsd:string repr: str jsonpath: name: jsonpath conforms_to: https://www.ietf.org/archive/id/draft-goessner-dispatch-jsonpath-00.html description: A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "jsonpath". from_schema: https://w3id.org/linkml/types base: str uri: xsd:string repr: str sparqlpath: name: sparqlpath conforms_to: https://www.w3.org/TR/sparql11-query/#propertypaths description: A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "sparqlpath". from_schema: https://w3id.org/linkml/types base: str uri: xsd:string repr: str enums: YesNoUnknownClassifcation: name: YesNoUnknownClassifcation description: Boolean classification with a third option indicating that the true value is not known. from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased enum_uri: xyzra:YesNoUnknownClassifcation permissible_values: 'yes': text: 'yes' description: Consent given 'no': text: 'no' description: No consent given unknown: text: unknown description: The true value is not known (yet) slots: orcid: name: orcid description: ORCID identifier of a person (see https://orcid.org). title: ORCID from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased slot_uri: xyzra:orcid range: string pattern: ^\d{4}-\d{4}-\d{4}-\d{3}[0-9X]{1}$ landing_page: name: landing_page description: A Web page that can be navigated to in a Web browser to gain access to a resource. title: Landing page from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased exact_mappings: - dcat:landingPage slot_uri: xyzra:landing_page range: uri target: name: target description: An objective that is the focus of an activity. title: Target from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased related_mappings: - obo:BFO_0000055 slot_uri: xyzra:target range: XYZObjective display_label: name: display_label description: Label that can be shown when the metadata record is displayed as an item. title: Record display label from_schema: https://concepts.datalad.org/s/flat/unreleased slot_uri: skos:prefLabel range: string display_note: name: display_note annotations: dash:singleLine: tag: dash:singleLine value: false description: Note that can be shown when the record is displayed as an item. This is typically longer than a label. title: Record display note from_schema: https://concepts.datalad.org/s/flat/unreleased slot_uri: skos:note range: string editorial_note: name: editorial_note annotations: dash:singleLine: tag: dash:singleLine value: false description: A comment about a metadata record either providing additional information for a record curation, or leaving a comment after curation occurred. This can be used to include information that is deemed relevant, but could not be expressed in the provided fields. title: Editorial note from_schema: https://concepts.datalad.org/s/flat/unreleased slot_uri: skos:editorialNote range: string multivalued: true keywords: name: keywords description: One or more keywords or tags describing the subject. from_schema: https://concepts.datalad.org/s/common-mixin/unreleased exact_mappings: - dcat:keyword - schema:keywords - obo:IAO_0000629 slot_uri: dlcommonmx:keywords range: string multivalued: true name: name: name description: Name of the subject. A name is closely related to a `title`, but often more compact and identifier-like, but without the implication of uniqueness of an identifier. A name is often used by technical systems to display an item in an organizational structure, such as a file in a directory hierarchy. from_schema: https://concepts.datalad.org/s/common-mixin/unreleased exact_mappings: - rdfs:label - schema:name - foaf:name close_mappings: - dcterms:title - obo:IAO_0000590 slot_uri: dlcommonmx:name range: string short_name: name: short_name description: A shortened name for the subject. For example, an acronym, initialism, nickname, or other abbreviation of the `name`. from_schema: https://concepts.datalad.org/s/common-mixin/unreleased exact_mappings: - pq:P1813 broad_mappings: - obo:NCIT_C42610 is_a: name slot_uri: dlcommonmx:short_name range: string title: name: title description: A summarily description of the subject. It is closely related to a `name`, but often less compact and more descriptive. Typically used for documents. from_schema: https://concepts.datalad.org/s/common-mixin/unreleased exact_mappings: - dcterms:title related_mappings: - schema:name slot_uri: dlcommonmx:title range: string about: name: about description: A relation of an information artifact to the subject, such as a URL identifying the topic of a document. from_schema: https://concepts.datalad.org/s/relations-mixin/unreleased exact_mappings: - schema:about - obo:IAO_0000136 slot_uri: dlrelationsmx:about range: Thing conforms_to: name: conforms_to description: An established standard to which the subject conforms. comments: - This property SHOULD be used to indicate a model, schema, ontology, view or profile that the subject conforms to. from_schema: https://concepts.datalad.org/s/relations-mixin/unreleased exact_mappings: - dcterms:conformsTo slot_uri: dlrelationsmx:conforms_to range: Thing depends_on: name: depends_on description: The subject depends on object in some way. from_schema: https://concepts.datalad.org/s/relations-mixin/unreleased exact_mappings: - obo:RO_0002502 slot_uri: dlrelationsmx:depends_on range: Thing kind: name: kind description: The nature of the subject. comments: - This is conceptually the same as an instance-level `broad_mappings`. It can make sense to use this slot (in addition) in order to enable straightforward type declarations for instances from a controlled, application specific vocabulary, while also keeping the ability to use `broad_mappings` for alignment with external vocabularies and applications. from_schema: https://concepts.datalad.org/s/relations-mixin/unreleased exact_mappings: - dcterms:type slot_uri: dlrelationsmx:kind range: Thing part_of: name: part_of description: The entity that the subject is a part of. A core relation that holds between a part and its whole. from_schema: https://concepts.datalad.org/s/relations-mixin/unreleased exact_mappings: - obo:BFO_0000050 - dcterms:isPartOf - schema:isPartOf slot_uri: dlrelationsmx:part_of range: Thing parts: name: parts description: A related resource that is included either physically or logically in the described resource. from_schema: https://concepts.datalad.org/s/relations-mixin/unreleased exact_mappings: - dcterms:hasPart - schema:hasPart slot_uri: dlrelationsmx:parts range: Thing multivalued: true roles: name: roles description: Describes the function of an entity or agent (object) within the scope of a relationship with the subject. from_schema: https://concepts.datalad.org/s/relations-mixin/unreleased exact_mappings: - prov:hadRole - dcat:had_role slot_uri: dlrelationsmx:roles range: Thing multivalued: true same_as: name: same_as description: Declares that the subject and an object are equal. Can be used to indicate a URL of a reference Web page that unambiguously indicates the subject's identity. For example, the URL of the subject's Wikipedia page, Wikidata entry, or official website. from_schema: https://concepts.datalad.org/s/relations-mixin/unreleased exact_mappings: - owl:sameAs close_mappings: - schema:sameAs slot_uri: dlrelationsmx:same_as range: Thing version_of: name: version_of description: A related resource of which the described resource is a version, edition, or adaptation. from_schema: https://concepts.datalad.org/s/relations-mixin/unreleased exact_mappings: - dcterms:isVersionOf slot_uri: dlrelationsmx:version_of range: Thing at_location: name: at_location description: Associate the subject with a location. This can be a geographic place, or another uniquely identified object. notes: - For specifying a context-specific location see `locator`. comments: - Does not define a range, because the desired type is highly use case specific. from_schema: https://concepts.datalad.org/s/spatial-mixin/unreleased exact_mappings: - prov:atLocation - schema:location slot_uri: dlspatialmx:at_location range: Thing locator: name: locator description: A descriptive identifier that locates a resource within a containing resource. This can be a unique name, a numerical key, or another notation that uniquely identifies the subject within the containing resource. notes: - For specifying a location via a globally unique identifier see `at_location`. from_schema: https://concepts.datalad.org/s/spatial-mixin/unreleased exact_mappings: - bibo:locator slot_uri: dlspatialmx:locator range: string broad_mappings: name: broad_mappings description: A list of terms from different schemas or terminology systems that have broader meaning. title: Broad mappings from_schema: https://concepts.datalad.org/s/things/v1 is_a: mappings slot_uri: skos:broadMatch range: uriorcurie multivalued: true close_mappings: name: close_mappings description: A list of terms from different schemas or terminology systems that have close meaning. title: Close mappings from_schema: https://concepts.datalad.org/s/things/v1 is_a: mappings slot_uri: skos:closeMatch range: uriorcurie multivalued: true description: name: description annotations: dash:singleLine: tag: dash:singleLine value: false description: A free-text account of the subject. title: Description from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - dcterms:description - rdfs:comment broad_mappings: - obo:IAO_0000300 slot_uri: dlthings:description range: string exact_mappings: name: exact_mappings description: A list of terms from different schemas or terminology systems that have identical meaning. title: Exact mappings from_schema: https://concepts.datalad.org/s/things/v1 is_a: mappings slot_uri: skos:exactMatch range: uriorcurie multivalued: true attributes: name: attributes description: Declares a relation that associates a `Thing` (or another attribute) with an attribute, where an attribute is an intrinsic characteristic, such as a quality, capability, disposition, function, or is an externally derived attribute determined from some descriptor (e.g. a quantity, position, label/identifier). Technically, this declaration is done via an `AttributeSpecification` that combines a `predicate` with a value declaration and the attribute-related slots of a `Thing`. Importantly, such attributes are declared inline, because they do not have a unique identifier. If an identifier is available, a `Thing` declaration (see `relation`), and a qualification of that relationship via a `Statement` (see `characterized_by`) should be preferred. title: Attributes from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - sio:SIO_000008 slot_uri: dlthings:attributes range: AttributeSpecification multivalued: true inlined: true inlined_as_list: true pid: name: pid description: Persistent and globally unique identifier of a `Thing`. title: Persistent identifier from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - dcterms:identifier - schema:identifier - ADMS:identifier slot_uri: dlthings:pid identifier: true range: uriorcurie characterized_by: name: characterized_by description: Qualifies relationships between a subject `Thing` and an object `Thing` with a `Statement` declaring a `predicate` on the nature of the relationship. title: Is characterized by from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - obo:RO_0000053 slot_uri: dlthings:characterized_by range: Statement multivalued: true inlined: true inlined_as_list: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://concepts.datalad.org/s/things/v1 slot_uri: skos:mappingRelation range: uriorcurie multivalued: true annotations: name: annotations description: A record of properties of the metadata record on a subject, a collection of tag/text tuples with the semantics of OWL Annotation. title: Annotations from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - obo:NCIT_C44272 slot_uri: dlthings:annotations range: Annotation multivalued: true inlined: true annotation_tag: name: annotation_tag description: A tag identifying an annotation. from_schema: https://concepts.datalad.org/s/things/v1 slot_uri: dlthings:annotation_tag range: Thing annotation_value: name: annotation_value description: The actual annotation. from_schema: https://concepts.datalad.org/s/things/v1 slot_uri: dlthings:annotation_value range: string narrow_mappings: name: narrow_mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. title: Narrow mappings from_schema: https://concepts.datalad.org/s/things/v1 is_a: mappings slot_uri: skos:narrowMatch range: uriorcurie multivalued: true object: name: object description: Reference to a `Thing` within a `Statement`. notes: - We do not declare a range here to be able to tighten the range in subclasses of class that need a particular range. This appears to be working around a linkml limitation. from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - rdf:object slot_uri: rdf:object relational_role: text: OBJECT description: a slot with this role connects a relationship to its object/target node meaning: http://www.w3.org/1999/02/22-rdf-syntax-ns#object multivalued: false inlined: false predicate: name: predicate description: Reference to a `Property` within a `Statement`. from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - rdf:predicate slot_uri: rdf:predicate relational_role: text: PREDICATE description: a slot with this role connects a relationship to its predicate/property meaning: http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate range: Property multivalued: false inlined: false range: name: range description: Declares that the value of a `Thing` or `AttributeSpecification` are instances of a particular class. from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - rdfs:range slot_uri: rdfs:range range: uriorcurie related_mappings: name: related_mappings description: A list of terms from different schemas or terminology systems that have related meaning. title: Related mappings from_schema: https://concepts.datalad.org/s/things/v1 is_a: mappings slot_uri: skos:relatedMatch range: uriorcurie multivalued: true relations: name: relations description: Declares an unqualified relation of the subject `Thing` to another `Thing`. This schema slot is used to define related things inline. If such a definition is not needed. A qualified relationship can be declared directly using the `characterized_by` slot. title: Relations from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - dcat:relation - dcterms:relation domain: Thing slot_uri: dlthings:relation symmetric: true relational_role: text: OBJECT description: a slot with this role connects a relationship to its object/target node meaning: http://www.w3.org/1999/02/22-rdf-syntax-ns#object range: Thing multivalued: true inlined: true inlined_as_list: false value: name: value description: Value that is a direct representation of a thing. from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - rdf:value slot_uri: rdf:value relational_role: text: OBJECT description: a slot with this role connects a relationship to its object/target node meaning: http://www.w3.org/1999/02/22-rdf-syntax-ns#object range: string byte_size: name: byte_size description: The size of the subject in bytes. from_schema: https://concepts.datalad.org/s/files-mixin/unreleased exact_mappings: - dcat:byteSize slot_uri: dlfilesmx:byte_size range: NonNegativeInteger distribution_of: name: distribution_of description: The resource that the subject is a distribution of. from_schema: https://concepts.datalad.org/s/files-mixin/unreleased broad_mappings: - sio:SIO_000426 slot_uri: dlfilesmx:distribution_of range: Thing format: name: format description: The file format of a distribution. notes: - When type of the distribution is defined by IANA, `media_type` should be used. from_schema: https://concepts.datalad.org/s/files-mixin/unreleased exact_mappings: - dcterms:format slot_uri: dlfilesmx:format range: Thing media_type: name: media_type description: The media type of a distribution as defined by IANA examples: - value: text/csv from_schema: https://concepts.datalad.org/s/files-mixin/unreleased see_also: - https://www.iana.org/assignments/media-types exact_mappings: - dcat:mediaType slot_uri: dlfilesmx:media_type range: string checksums: name: checksums description: The checksum property provides a mechanism that can be used to verify that the contents of a file or package have not changed. from_schema: https://concepts.datalad.org/s/flat-files/unreleased exact_mappings: - spdx:checksum slot_uri: dlflatfiles:checksums range: Checksum multivalued: true inlined: true inlined_as_list: true at_time: name: at_time description: Time at which an instanteneous event takes place or took place. from_schema: https://concepts.datalad.org/s/temporal-mixin/unreleased exact_mappings: - prov:atTime slot_uri: dltemporalmx:at_time range: W3CISO8601 date_modified: name: date_modified description: Timepoint at which the subject was (last) changed, updated or modified. notes: - successful validation with `datetime` as a range and linkml-jsonschema-validate` depends on a patched linkml, see https://github.com/linkml/linkml/issues/1806 - a related problem also exists for `linkml-validate`, we cannot have a more specific range right now from_schema: https://concepts.datalad.org/s/temporal-mixin/unreleased exact_mappings: - dcterms:modified slot_uri: dltemporalmx:date_modified range: W3CISO8601 date_published: name: date_published description: Timepoint at which the subject was (last) published. from_schema: https://concepts.datalad.org/s/temporal-mixin/unreleased exact_mappings: - schema:datePublished - dcterms:issued slot_uri: dltemporalmx:date_published range: W3CISO8601 started_at: name: started_at description: Start is when an activity is deemed to have been started by some trigger. The activity did not exist before its start. Any usage, generation, or invalidation involving an activity follows the activity's start. from_schema: https://concepts.datalad.org/s/temporal-mixin/unreleased exact_mappings: - prov:startedAtTime slot_uri: dltemporalmx:started_at range: W3CISO8601 ended_at: name: ended_at description: End is when an activity is deemed to have been ended by some trigger. The activity no longer exists after its end. Any usage, generation, or invalidation involving an activity precedes the activity's end. from_schema: https://concepts.datalad.org/s/temporal-mixin/unreleased exact_mappings: - prov:endedAtTime slot_uri: dltemporalmx:ended_at range: W3CISO8601 doi: name: doi description: Associated Digital Object Identifier (DOI; ISO 26324; see https://doi.org). The value must be just the DOI without the URL project. So just `10.1038/s41597-022-01163-2` and not `https://doi.org/10.1038/s41597-022-01163-2`. title: DOI from_schema: https://concepts.datalad.org/s/publications-mixin/unreleased slot_uri: dlpublicationsmx:doi range: string issn: name: issn description: Associated International Standard Serial Number (ISSN) identifier (see https://www.issn.org). title: ISSN from_schema: https://concepts.datalad.org/s/publications-mixin/unreleased slot_uri: dlpublicationsmx:issn range: string pattern: ^\d{4}-\d{3}[0-9X]{1}$ published_at: name: published_at description: The venue a publication was made. from_schema: https://concepts.datalad.org/s/publications-mixin/unreleased slot_uri: dlpublicationsmx:published_at range: Thing quantitative_unit: name: quantitative_unit description: Unit of the quantitative value associated with the subject. title: Unit from_schema: https://concepts.datalad.org/s/quantities-mixin/unreleased slot_uri: dlquantmx:quantitative_unit range: Thing quantitative_value: name: quantitative_value description: Quantitative value associated with the subject. title: Value from_schema: https://concepts.datalad.org/s/quantities-mixin/unreleased slot_uri: dlquantmx:quantitative_value range: float rules: name: rules description: Permissions, prohibitions, obligatations or other rights/policies associated with the resource. This could refer to a standard license, a custom usage agreement, or a codified policy. title: Rules from_schema: https://concepts.datalad.org/s/resources-mixin/unreleased narrow_mappings: - odrl:hasPolicy - dcterms:rights - dcterms:license slot_uri: dlresmx:rules range: Thing multivalued: true howto_acknowledge: name: howto_acknowledge description: A description of how the subject should be acknowledged. from_schema: https://concepts.datalad.org/s/resources-mixin/unreleased slot_uri: dlresmx:howto_acknowledge range: string funding: name: funding description: Source of funding for the subject, such as a specific grant. notes: - This property is obsolete and should be removed. from_schema: https://concepts.datalad.org/s/resources-mixin/unreleased exact_mappings: - schema:funding slot_uri: dlresmx:funding range: Thing sponsor: name: sponsor description: An agent that supports a thing through a pledge, promise, or financial contribution. notes: - This property is obsolete and only still here, because of a legacy use in the resources schema. from_schema: https://concepts.datalad.org/s/resources-mixin/unreleased exact_mappings: - schema:sponsor close_mappings: - obo:SLSO_0001139 slot_uri: dlresmx:sponsor range: Thing family_name: name: family_name description: The (inherited) family name of the subject. In many Western languages this is the "last name". title: Family name from_schema: https://concepts.datalad.org/s/social-mixin/unreleased exact_mappings: - foaf:familyName - vcard:family-name is_a: name slot_uri: dlsocialmx:family_name range: string formatted_name: name: formatted_name description: A formatted text corresponding to the name of the subject. from_schema: https://concepts.datalad.org/s/social-mixin/unreleased exact_mappings: - vcard:fn is_a: name slot_uri: dlsocialmx:formatted_name range: string honorific_name_prefix: name: honorific_name_prefix description: The honorific prefix(es) of the subject's name. For example, (academic/formal) titles like "Mrs", or "Dr", "Dame". title: Title or prefix from_schema: https://concepts.datalad.org/s/social-mixin/unreleased exact_mappings: - vcard:honorific-suffix is_a: name slot_uri: dlsocialmx:honorific_name_prefix range: string honorific_name_suffix: name: honorific_name_suffix description: The honorific suffix(es) of the subject's name. For example, generation labels ("III"), or indicators of an academic degree, a profession, or a position ("MD", "BA"). title: Suffix from_schema: https://concepts.datalad.org/s/social-mixin/unreleased exact_mappings: - vcard:honorific-suffix is_a: name slot_uri: dlsocialmx:honorific_name_suffix range: string given_name: name: given_name description: The given (non-inherited) name of the subject. title: Given name from_schema: https://concepts.datalad.org/s/social-mixin/unreleased exact_mappings: - foaf:familyName - vcard:given-name is_a: name slot_uri: dlsocialmx:given_name range: string nickname: name: nickname description: A short informal, invented given name for a person or thing used instead of the actual name of the person or thing. title: Nickname from_schema: https://concepts.datalad.org/s/social-mixin/unreleased exact_mappings: - vcard:nickname is_a: name slot_uri: dlsocialmx:nickname range: string additional_names: name: additional_names description: Additional name(s) associated with the subject, such as one or more middle names. title: Additional names from_schema: https://concepts.datalad.org/s/social-mixin/unreleased exact_mappings: - vcard:additional_name is_a: name slot_uri: dlsocialmx:additional_names range: string multivalued: true schema_type: name: schema_type description: State that the subject is an instance of a particular schema class. Typically, no explicit value needs to be assigned to this slot, because it matches the class type of a particular record. However, this slots can be used as a type designator of a schema element for validation and schema structure handling purposes. This is used to indicate specialized schema classes for properties that accept a hierarchy of classes as their range. from_schema: https://concepts.datalad.org/s/types/v1 exact_mappings: - dcterms:type slot_uri: rdf:type designates_type: true range: NodeUriOrCurie creator: name: creator description: An agent responsible for making an entity. notes: - The `range` is only `uriorcurie` here (and not `Thing`), because we have an `ifabsent` declaration for DOIs that only work with this type. And even for that it needs a patch. from_schema: https://concepts.datalad.org/s/identifiers/unreleased exact_mappings: - dcterms:creator slot_uri: dlidentifiers:creator range: uriorcurie identifiers: name: identifiers description: An unambiguous reference to the subject within a given context. from_schema: https://concepts.datalad.org/s/identifiers/unreleased exact_mappings: - dcterms:identifier - schema:identifier - ADMS:identifier slot_uri: dlidentifiers:identifier range: Identifier multivalued: true inlined: true inlined_as_list: true notation: name: notation description: String of characters such as "T58:5" or "30:4833" used to uniquely identify a concept within the scope of a given concept scheme. from_schema: https://concepts.datalad.org/s/identifiers/unreleased exact_mappings: - skos:notation slot_uri: dlidentifiers:notation range: string schema_agency: name: schema_agency description: Name of the agency that issued an identifier. from_schema: https://concepts.datalad.org/s/identifiers/unreleased exact_mappings: - ADMS:schemaAgency slot_uri: dlidentifiers:schema_agency range: string dimensions: name: dimensions description: Associated outcome variables. title: Outcomes variables from_schema: https://concepts.datalad.org/s/study-mixin/unreleased slot_uri: dlstudymx:dimensions range: Thing multivalued: true factors: name: factors description: Factors that influence the subject matter. title: Influencing factors from_schema: https://concepts.datalad.org/s/study-mixin/unreleased slot_uri: dlstudymx:factors range: Thing multivalued: true instruments: name: instruments description: Instruments employed in a study activity. This could be physical devices, but also software tools. title: Used instruments from_schema: https://concepts.datalad.org/s/study-mixin/unreleased slot_uri: dlstudymx:instruments range: Thing multivalued: true study: name: study description: The study in which the subject took place or existed. title: Study context from_schema: https://concepts.datalad.org/s/study-mixin/unreleased slot_uri: dlstudymx:study range: Thing alternate_of: name: alternate_of description: Two alternate entities present aspects of the same thing. These aspects may be the same or different, and the alternate entities may or may not overlap in time. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:alternateOf slot_uri: dlprovmx:alternate_of range: Thing associated_with: name: associated_with description: An activity association is an assignment of responsibility to an agent for an activity, indicating that the agent had a role in the activity. It further allows for a plan to be specified, which is the plan intended by the agent to achieve some goals in the context of this activity. notes: - PROV-O "wasAssociatedWith" is a short-cut property. "Association" also has "agent". from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:wasAssociatedWith is_a: influenced_by slot_uri: dlprovmx:associated_with range: Association attributed_to: name: attributed_to description: Attribution is the ascribing of an entity to an agent. notes: - PROV-O "wasAttributedTo" is a short-cut property. "Attribution" also has "agent". from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:wasAttributedTo is_a: influenced_by slot_uri: dlprovmx:attributed_to range: Attribution delegated_by: name: delegated_by description: Delegation is the assignment of authority and responsibility to an agent (by itself or by another agent) to carry out a specific activity as a delegate or representative, while the agent it acts on behalf of retains some responsibility for the outcome of the delegated work. For example, a student acted on behalf of his supervisor, who acted on behalf of the department chair, who acted on behalf of the university; all those agents are responsible in some way for the activity that took place but we do not say explicitly who bears responsibility and to what degree. notes: - This is PROV-O's "acted_on_behalf_of", which is a short-cut property -- "Delegation" also identifies an agent. - naming is different for homogeneity with the other slots from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:actedOnBehalfOf is_a: influenced_by slot_uri: dlprovmx:delegated_by range: Delegation derived_from: name: derived_from description: A entity from which the subject was created through some kind of process. Derivation is a transformation of an entity into another, an update of an entity resulting in a new one, or the construction of a new entity based on a pre-existing entity. title: Derived from notes: - PROV-O "wasDerivedFrom" is a short-cut property. "Derivation" also has "entity". from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:wasDerivedFrom is_a: influenced_by slot_uri: dlprovmx:derived_from range: Derivation ended: name: ended description: End is when an activity is deemed to have been ended by an entity, known as trigger. The activity no longer exists after its end. Any usage, generation, or invalidation involving an activity precedes the activity's end. An end may refer to a trigger entity that terminated the activity, or to an activity, known as ender that generated the trigger. notes: - PROV-O "endedAt" is a short-cut property. "Start" also has "atTime". - same naming remarks as for "started" apply. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:wasEndedBy is_a: influenced_by slot_uri: dlprovmx:ended range: End generated_by: name: generated_by description: Identification of the process that led to the production of the subject entity. Generation is the completion of production of a new entity by an activity. This entity did not exist before generation and becomes available for usage after this generation. title: Generated by notes: - PROV-O "wasGeneratedBy" is a short-cut property. "Generation" also has "activity". from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:wasGeneratedBy is_a: influenced_by slot_uri: dlprovmx:generated_by range: Generation influenced_by: name: influenced_by description: Influence is the capacity of an entity, activity, or agent to have an effect on the character, development, or behavior of another by means of usage, start, end, generation, invalidation, communication, derivation, attribution, association, or delegation. title: Influenced by notes: - PROV-O "wasInfluencedBy" is a short-cut property. "Influence" also identifies an "influencer". from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:wasInfluencedBy slot_uri: dlprovmx:influenced_by range: Influence informed_by: name: informed_by description: Communication is the exchange of an entity by two activities, one activity using the entity generated by the other. notes: - PROV-O "wasInformedBy" is a short-cut property. "Communication" also has "activity". from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:wasInformedBy is_a: influenced_by slot_uri: dlprovmx:informed_by range: Communication invalidated_by: name: invalidated_by description: Invalidation is the start of the destruction, cessation, or expiry of an existing entity by an activity. The entity is no longer available for use (or further invalidation) after invalidation. Any generation or usage of an entity precedes its invalidation. notes: - PROV-O "wasInvalidatedBy" is a short-cut property. "Invalidation" also identifies an "entity". from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:wasInvalidatedBy is_a: influenced_by slot_uri: dlprovmx:invalidated_by range: Invalidation quoted_from: name: quoted_from description: A quotation is the repeat of (some or all of) an entity, such as text or image, by someone who may or may not be its original author. Quotation is a particular case of derivation. notes: - PROV-O "wasQuotedFrom" is a short-cut property. "Quotation" also identifies an "entity". from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:wasQuotedFrom is_a: derived_from slot_uri: dlprovmx:quoted_from range: Quotation revision_of: name: revision_of description: A revision is a derivation for which the resulting entity is a revised version of some original. The implication here is that the resulting entity contains substantial content from the original. Revision is a particular case of derivation. notes: - PROV-O "wasRevisionOf" is a short-cut property. "Revision" also identifies an "entity". from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:wasRevisionOf is_a: derived_from slot_uri: dlprovmx:revision_of range: Revision specialization_of: name: specialization_of description: An entity that is a specialization of another shares all aspects of the latter, and additionally presents more specific aspects of the same thing as the latter. In particular, the lifetime of the entity being specialized contains that of any specialization. Examples of aspects include a time period, an abstraction, and a context associated with the entity. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:specializationOf is_a: alternate_of slot_uri: dlprovmx:specialization_of range: Thing started: name: started description: Start is when an activity is deemed to have been started by an entity, known as trigger. The activity did not exist before its start. Any usage, generation, or invalidation involving an activity follows the activity's start. A start may refer to a trigger entity that set off the activity, or to an activity, known as starter, that generated the trigger. notes: - PROV-O "startedAt" is a short-cut property. "Start" also has "atTime". - name is just started, because the association class Start has both time information and trigger information. Hence the name needs to capture both started_by and started_at. "started" has the unfortunate ambiguity of having started an activity, however the range "Start" is an "EntityInfluence" where the linked "object" is an Entity -- hopefully limiting the confusion. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:wasStartedBy is_a: influenced_by slot_uri: dlprovmx:started range: Start used: name: used description: Usage is the beginning of utilizing an entity by an activity. Before usage, the activity had not begun to utilize this entity and could not have been affected by the entity. title: Used notes: - PROV-O "used" is a short-cut property. "Usage" also has "entity". from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:used slot_uri: dlprovmx:used range: Usage classes: XYZAccolade: name: XYZAccolade description: An award, prize, or other honor received in recognition of an achievement. title: Accolade from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: FlatThing mixins: - EntityMixin slots: - title - at_time slot_usage: title: name: title required: true at_time: name: at_time title: Received on close_mappings: - schema:dateReceived range: flexdate class_uri: xyzra:XYZAccolade XYZDataItem: name: XYZDataItem description: 'An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements. This is a conceptual entity. A single data item might be available in more than one representation, with differing formats, and serializations.' title: Data item from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: DataItem mixins: - EntityMixin slot_usage: part_of: name: part_of range: XYZDataset multivalued: true same_as: name: same_as description: The value of a qualitative assessment. title: Qualitative value quantitative_value: name: quantitative_value description: The value of a quantitative assessment. title: Quantitative value kind: name: kind range: XYZDataType generated_by: name: generated_by range: XYZGeneration derived_from: name: derived_from range: XYZDerivation attributed_to: name: attributed_to range: XYZAttribution class_uri: xyzra:XYZDataItem XYZDataType: name: XYZDataType description: Type of an data item. title: Data type or format from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased narrow_mappings: - obo:NCIT_C171252 - obo:NCIT_C42645 - obo:NCIT_C172272 broad_mappings: - dcterms:format is_a: FlatThing slots: - version_of slot_usage: version_of: name: version_of title: Variant of range: XYZDataType class_uri: xyzra:XYZDataType XYZConvention: name: XYZConvention description: A set of agreed, stipulated, or generally accepted standards, norms, social norms, or criteria, often taking the form of a custom. title: Convention from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: Convention class_uri: xyzra:XYZConvention XYZDataset: name: XYZDataset description: A collection of data, published or curated by a single agent. This is a conceptual entity. A single dataset might be available in more than one representation, with differing schematic layouts, formats, and serializations. title: Dataset from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: Dataset slots: - about - attributed_to - generated_by - landing_page - rules - same_as slot_usage: about: name: about description: Topics covered associated with this dataset. title: Topic(s) range: XYZTopic multivalued: true attributed_to: name: attributed_to range: Attribution multivalued: true inlined: true inlined_as_list: true generated_by: name: generated_by range: XYZGeneration part_of: name: part_of range: XYZDataset multivalued: true rules: name: rules range: XYZRule same_as: name: same_as range: XYZDataset multivalued: true class_uri: xyzra:XYZDataset XYZDistribution: name: XYZDistribution description: A specific representation of a data item, which may come in the form of an electronic file, or an archive or directory of many files. title: Distribution from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: Distribution slots: - conforms_to - rules slot_usage: kind: name: kind range: XYZDataType distribution_of: name: distribution_of multivalued: true parts: name: parts range: XYZNamedDistributionPart inlined: true rules: name: rules range: XYZRule conforms_to: name: conforms_to range: XYZConvention multivalued: true class_uri: xyzra:XYZDistribution XYZNamedDistributionPart: name: XYZNamedDistributionPart description: An association class for attaching a `locator` as additional information to a `hasPart` relationship. from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: NamedDistributionPart slot_usage: roles: name: roles range: XYZDistributionPartType class_uri: xyzra:XYZNamedDistributionPart XYZDistributionPartType: name: XYZDistributionPartType description: Type or role of a part of a distribution. For example, a part could be an item in an archive, or a file that is an executable. title: Distribution part type/role from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: FlatThing class_uri: xyzra:XYZDistributionPartType XYZDocument: name: XYZDocument description: A conceptual entity representing things which a, broadly conceived, "documents. This includes non-textual things like images. A conceputal document is to be distinguished from its physical, or electronic distributions. title: Document from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: Document slots: - about - attributed_to - rules slot_usage: kind: name: kind description: The type of this document, e.g. journal article, book, webpage title: Document type range: XYZBibliographicType attributed_to: name: attributed_to title: Contributors range: XYZPersonAttribution multivalued: true inlined: true inlined_as_list: true part_of: name: part_of multivalued: true rules: name: rules range: XYZRule about: name: about description: Topics covered in this document. title: Topic(s) range: XYZTopic multivalued: true class_uri: xyzra:XYZDocument XYZConcept: name: XYZConcept description: 'An idea or notion; a unit of thought. In the context of a study, this can be a tag associated with a categorical, independent variable in a study design, an investigative role (e.g., treatments), or an organizational nature (e.g., site labels), or a dependent or outcome variable. `Concept` is related to `Topic`. However a concept is more focused and more clearly delineated in comparison.' title: Concept comments: - The relationship of a focused concept with the broader concept can be described via `broader_mappings`. from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: FlatThing slots: - title class_uri: xyzra:XYZConcept XYZGenesis: name: XYZGenesis description: A process in which an entity comes into being as a result of the process. title: Genesis comments: - This class is intended to cover generative processes and activities, while `Study` covers investigational (scientific) activities, and `Project` covers organizational activities. from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased exact_mappings: - obo:NCIT_C48151 - obo:IDO_0000607 broad_mappings: - obo:BFO_0000015 - prov:Activity is_a: FlatThing slots: - conforms_to - kind - name - part_of - target - used slot_usage: kind: name: kind range: XYZGenesis conforms_to: name: conforms_to range: XYZConvention multivalued: true used: name: used multivalued: true any_of: - range: XYZDistribution - range: XYZInstrument part_of: name: part_of multivalued: true any_of: - range: XYZStudy - range: XYZGenesis target: name: target multivalued: true class_uri: xyzra:XYZGenesis XYZGrant: name: XYZGrant description: A grant, typically financial or otherwise quantifiable, resources. title: Grant from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: Grant mixins: - EntityMixin slots: - rules slot_usage: part_of: name: part_of range: XYZGrant multivalued: true rules: name: rules range: XYZRule class_uri: xyzra:XYZGrant XYZInstrument: name: XYZInstrument description: A thing that enables an agent to perform an action. This is typically a device (e.g., a machine to perform a particular type of measurement), but it can also be a questionnaire that is used to perform a particular kind of assessment. An instrument is typically not a "reagent". title: Instrument from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: Instrument slots: - attributed_to - rules slot_usage: kind: name: kind description: The type of this instrument, e.g. microscope, software, chainsaw title: Instrument type range: XYZInstrumentType attributed_to: name: attributed_to range: XYZPersonAttribution multivalued: true inlined: true inlined_as_list: true rules: name: rules range: XYZRule class_uri: xyzra:XYZInstrument XYZOrganization: name: XYZOrganization description: A social or legal institution such as a company, a society, or a university. title: Organization from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: Organization slot_usage: part_of: name: part_of description: An organization that the subject is part of. range: XYZOrganization multivalued: true class_uri: xyzra:XYZOrganization XYZPerson: name: XYZPerson description: Person agents are people, alive, dead, or fictional. title: Person from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: Person slots: - part_of slot_usage: part_of: name: part_of title: Member of range: XYZOrganization multivalued: true class_uri: xyzra:XYZPerson XYZProject: name: XYZProject description: A collective endeavour of some kind. Typically it is a planned process that is undertaken or attempted to meet some requirement, or to achieve a particular goal. title: Project from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: Project slots: - attributed_to - part_of - target slot_usage: attributed_to: name: attributed_to range: XYZPersonAttribution multivalued: true inlined: true inlined_as_list: true part_of: name: part_of range: XYZProject multivalued: true target: name: target multivalued: true class_uri: xyzra:XYZProject XYZPublication: name: XYZPublication description: A resource that is the output of a publishing process. title: Publication from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: Publication slots: - attributed_to - derived_from - doi - generated_by - rules slot_usage: doi: name: doi title: DOI recommended: true title: name: title description: The full title of the publication. required: false attributed_to: name: attributed_to title: Contributors range: XYZPersonAttribution multivalued: true inlined: true inlined_as_list: true published_at: name: published_at range: XYZPublicationVenue locator: name: locator description: A descriptive identifier that the publication within the venue it was published at. For a journal article, this would be a volume and/or page range. Format according to the conventions of the publication venue. title: Location within publication venue kind: name: kind description: The type of this publication, e.g. journal article, book, webpage title: Publication type range: XYZBibliographicType about: name: about description: Topics covered by this publication. title: Topic(s) range: XYZTopic recommended: true multivalued: true date_published: name: date_published description: The date when a publication became available at the publication venue. range: flexdate generated_by: name: generated_by description: Any project that contributed to the outcomes described in the publication. title: Contributing project(s) range: XYZProject recommended: true multivalued: true derived_from: name: derived_from description: Any dataset that informed the outcomes described in the publication. title: Associated dataset(s) range: XYZDataset recommended: true multivalued: true rules: name: rules range: XYZRule class_uri: xyzra:XYZPublication XYZBibliographicType: name: XYZBibliographicType description: Type of a publication or document, e.g., journal article, book, or webpage. title: Bibliographic type from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: FlatThing class_uri: xyzra:XYZBibliographicType XYZInstrumentType: name: XYZInstrumentType description: Type of an instrument. title: Instrument type from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: FlatThing class_uri: xyzra:XYZInstrumentType XYZPublicationVenue: name: XYZPublicationVenue description: '"Place" of a publication, e.g., a journal, a website, an edited collection.' title: Publication venue from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: FlatThing slots: - title - kind slot_usage: title: name: title description: The full title of the publication. required: false kind: name: kind description: The type of this publication venue, e.g. journal article, book, webpage title: Publication venue type range: XYZBibliographicType class_uri: xyzra:XYZPublicationVenue XYZStudy: name: XYZStudy description: 'A planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s).' title: Study from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: Study slots: - attributed_to - target slot_usage: factors: name: factors range: XYZConcept multivalued: true instruments: name: instruments range: XYZInstrument multivalued: true dimensions: name: dimensions range: XYZConcept multivalued: true attributed_to: name: attributed_to title: Contributors range: XYZPersonAttribution multivalued: true inlined: true inlined_as_list: true part_of: name: part_of range: XYZStudy multivalued: true associated_with: name: associated_with range: XYZProject multivalued: true target: name: target multivalued: true class_uri: xyzra:XYZStudy XYZSubject: name: XYZSubject description: A subject is an entity being investigated in a study. This is a contextual entity. One and the same entity can be different subjects in two different studies. title: Subject from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: Subject slots: - same_as slot_usage: study: name: study range: XYZStudy kind: name: kind range: XYZSubjectType derived_from: name: derived_from range: XYZSubject same_as: name: same_as range: XYZSubject class_uri: xyzra:XYZSubject XYZSubjectType: name: XYZSubjectType description: Type of a subject. title: Subject type from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: FlatThing class_uri: xyzra:XYZSubjectType XYZTopic: name: XYZTopic description: Topic a subject is about, e.g., a particular research question or domain title: Topic from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: FlatThing slots: - part_of slot_usage: part_of: name: part_of range: XYZTopic multivalued: true class_uri: xyzra:XYZTopic XYZRule: name: XYZRule description: Permissions, prohibitions, obligatations or other rights/policies. This can be a standard license, a custom usage agreement, or a codified policy. title: Rule from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: FlatThing slots: - title - short_name class_uri: xyzra:XYZRule XYZAgentRole: name: XYZAgentRole description: A role is the function of an agent with respect to a subject, in the context of an attribution. title: Agent role from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased broad_mappings: - prov:Role - dcat:Role is_a: FlatThing slots: - name class_uri: xyzra:XYZAgentRole XYZPersonAttribution: name: XYZPersonAttribution description: An association class for attributing a subject to a person and qualifying the relationship with particular roles. from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased close_mappings: - prov:Attribution slots: - roles - object - display_label slot_usage: object: name: object title: Person range: XYZPerson roles: name: roles description: Roles a person had with respect to the subject range: XYZAgentRole multivalued: true class_uri: xyzra:XYZPersonAttribution XYZObjective: name: XYZObjective description: A proposition that indicates a planned or anticipated outcome. title: Objective from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: FlatThing slots: - attributed_to - title - part_of - depends_on slot_usage: part_of: name: part_of range: XYZProject multivalued: true depends_on: name: depends_on range: XYZObjective multivalued: true attributed_to: name: attributed_to title: Contributors range: XYZPersonAttribution multivalued: true inlined: true inlined_as_list: true class_uri: xyzra:XYZObjective XYZAttribution: name: XYZAttribution description: Attribution is the ascribing of an entity to an agent. When an entity e is attributed to agent ag, entity e was generated by some unspecified activity that in turn was associated to agent ag. Thus, this relation is useful when the activity is not known, or irrelevant. from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: Attribution class_uri: xyzra:XYZAttribution XYZDerivation: name: XYZDerivation description: A derivation is a transformation of an entity into another, an update of an entity resulting in a new one, or the construction of a new entity based on a pre-existing entity. from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: Derivation slot_usage: used: name: used range: XYZUsage generated_by: name: generated_by range: XYZGeneration class_uri: xyzra:XYZDerivation XYZGeneration: name: XYZGeneration description: Generation is the completion of production of a new entity by an activity. This entity did not exist before generation and becomes available for usage after this generation. comments: - The `used` slot is added to be able to express something like a sample generation using a generic activity and combine them with a target entity (like a subject) with an appropriate role declaration. PROV-O's approach is to have a dedicated activity (which has `used`) instance for each generation. Adding `used` here appears to be less effortful. from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: Generation slots: - used slot_usage: object: name: object range: XYZGenesis roles: name: roles used: name: used range: XYZUsage class_uri: xyzra:XYZGeneration XYZUsage: name: XYZUsage description: Usage is the beginning of utilizing an entity by an activity. Before usage, the activity had not begun to utilize this entity and could not have been affected by the entity. from_schema: https://concepts.datalad.org/s/demo-research-assets/unreleased is_a: Usage slot_usage: roles: name: roles class_uri: xyzra:XYZUsage FlatThing: name: FlatThing description: '`Thing` variant that provides a basis for the annotation and curation of more specialized concepts. It equips `Thing` with additional slots to annotate labels and notes that aid information entry and curation in workflows and user interfaces. Moreover, the `identifiers` slot enables the specification is any number of identifiers (issued or computed) associated with a `Thing`.' title: Thing from_schema: https://concepts.datalad.org/s/flat/unreleased is_a: Thing slots: - display_label - display_note - editorial_note - identifiers slot_usage: characterized_by: name: characterized_by range: FlatStatement attributes: name: attributes range: FlatAttributeSpecification annotations: name: annotations range: FlatAnnotation class_uri: dlflat:FlatThing FlatStatement: name: FlatStatement description: An RDF statement that links a `predicate` (a `Property`) with an `object` (a `Thing`) to the subject to form a triple. A `Statement` is used to qualify a relation to a `Thing` referenced by its identifier. For specifying a qualified relation to an attribute that has no dedicated identifier, use an `AttributeSpecification`. title: Statement from_schema: https://concepts.datalad.org/s/flat/unreleased is_a: Statement slot_usage: predicate: name: predicate range: FlatProperty class_uri: dlflat:FlatStatement FlatProperty: name: FlatProperty description: An RDF property, a `Thing` used to define a `predicate`, for example in a `Statement`. title: Property from_schema: https://concepts.datalad.org/s/flat/unreleased is_a: Property slots: - display_label - display_note - editorial_note class_uri: dlflat:FlatProperty FlatAttributeSpecification: name: FlatAttributeSpecification description: An attribute is conceptually a thing, but it requires no dedicated identifier (`pid`). Instead, it is linked to a `Thing` via its `attributes` slot and declares a `predicate` on the nature of the relationship. title: Attribute from_schema: https://concepts.datalad.org/s/flat/unreleased is_a: AttributeSpecification slot_usage: predicate: name: predicate range: FlatProperty class_uri: dlflat:FlatAttributeSpecification AnnotationTag: name: AnnotationTag description: A tag identifying an annotation. title: Annotation tag from_schema: https://concepts.datalad.org/s/flat/unreleased is_a: FlatThing class_uri: dlflat:AnnotationTag FlatAnnotation: name: FlatAnnotation description: A tag/value pair with the semantics of OWL Annotation. title: Annotation from_schema: https://concepts.datalad.org/s/flat/unreleased is_a: Annotation slot_usage: annotation_tag: name: annotation_tag key: true range: AnnotationTag class_uri: dlflat:FlatAnnotation ThingMixin: name: ThingMixin description: Mix-in with the common interface of `Thing` and `AttributeSpecification`. This interface enables type specifications (`rdf:type`) for things and attributes via a `type` designator slot to indicate specialized schema classes for validation where a slot's `range` is too generic. A thing or attribute can be further describe with statements on qualified relations to other things (`characterized_by`), or inline attributes (`attributes`). A set of `mappings` slots enables the alignment for arbitrary external schemas and terminologies. from_schema: https://concepts.datalad.org/s/things/v1 mixin: true slots: - annotations - broad_mappings - close_mappings - description - exact_mappings - attributes - characterized_by - narrow_mappings - related_mappings - schema_type class_uri: dlthings:ThingMixin ValueSpecificationMixin: name: ValueSpecificationMixin description: Mix-in for a (structured) value specification. Two slots are provided to define a (literal) value (`value`) and its type (`range`). from_schema: https://concepts.datalad.org/s/things/v1 mixin: true slots: - range - value class_uri: dlthings:ValueSpecificationMixin AttributeSpecification: name: AttributeSpecification description: An attribute is conceptually a thing, but it requires no dedicated identifier (`pid`). Instead, it is linked to a `Thing` via its `attributes` slot and declares a `predicate` on the nature of the relationship. from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - sio:SIO_000614 close_mappings: - dlthings:Thing mixins: - ThingMixin - ValueSpecificationMixin slots: - predicate slot_usage: predicate: name: predicate required: true class_uri: dlthings:AttributeSpecification Property: name: Property description: An RDF property, a `Thing` used to define a `predicate`, for example in a `Statement`. from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - rdf:Property is_a: Thing class_uri: dlthings:Property Statement: name: Statement description: An RDF statement that links a `predicate` (a `Property`) with an `object` (a `Thing`) to the subject to form a triple. A `Statement` is used to qualify a relation to a `Thing` referenced by its identifier. For specifying a qualified relation to an attribute that has no dedicated identifier, use an `AttributeSpecification`. from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - rdf:Statement slots: - object - predicate slot_usage: object: name: object range: Thing required: true predicate: name: predicate required: true class_uri: dlthings:Statement Thing: name: Thing description: The most basic, identifiable item. In addition to the slots that are common between a `Thing` and an `AttributeSpecification` (see `ThingMixin`), two additional slots are provided. The `pid` slot takes the required identifier for a `Thing`. The `relation` slot allows for the inline specification of other `Thing` instances. Such a relation is unqualified (and symmetric), and should be further characterized via a `Statement` (see `characterized_by`). From a schema perspective, the `relation` slots allows for building self-contained, structured documents (e.g., a JSON object) with arbitrarily complex information on a `Thing`. from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - schema:Thing mixins: - ThingMixin slots: - pid - relations slot_usage: pid: name: pid annotations: sh:order: tag: sh:order value: 1 characterized_by: name: characterized_by annotations: sh:order: tag: sh:order value: 2 attributes: name: attributes annotations: sh:order: tag: sh:order value: 3 description: name: description annotations: sh:order: tag: sh:order value: 4 dash:singleLine: tag: dash:singleLine value: false annotations: name: annotations annotations: sh:order: tag: sh:order value: 5 relations: name: relations annotations: sh:order: tag: sh:order value: 6 exact_mappings: name: exact_mappings annotations: sh:order: tag: sh:order value: 7 close_mappings: name: close_mappings annotations: sh:order: tag: sh:order value: 8 broad_mappings: name: broad_mappings annotations: sh:order: tag: sh:order value: 9 narrow_mappings: name: narrow_mappings annotations: sh:order: tag: sh:order value: 10 related_mappings: name: related_mappings annotations: sh:order: tag: sh:order value: 11 class_uri: dlthings:Thing ValueSpecification: name: ValueSpecification description: A `Thing` that is a value of some kind. This class can be used to describe an outcome of a measurement, a factual value or constant, or other qualitative or quantitative information with an associated identifier. If no identifier is available, an `AttributeSpecification` can be used within the context of an associated `Thing` (`attributes`). from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - obo:OBI_0001933 is_a: Thing mixins: - ValueSpecificationMixin slot_usage: value: name: value notes: - It is required, because when it is not needed, `Thing` should be used as a type. Its absence is therefore likely a sign of an error. required: true class_uri: dlthings:ValueSpecification Annotation: name: Annotation description: A tag/value pair with the semantics of OWL Annotation. from_schema: https://concepts.datalad.org/s/things/v1 slots: - annotation_tag - annotation_value slot_usage: annotation_tag: name: annotation_tag key: true class_uri: dlthings:Annotation Distribution: name: Distribution description: A specific representation of a data item, which may come in the form of an electronic file, or an archive or directory of many files, may be standalone or part of a larger collection. comments: - There is no `name` property or similar, because the focus is on the identity of the distribution content, not how it might be named in a particular context. For example, an image in JPEG format might be names "20250825_102385.jpg" on a camera and "me_at_the_party.jpg" elsewhere, but it would be the exact same image. Expressing naming in some context should be done within the scope of the containing entity (see `named_parts`). from_schema: https://concepts.datalad.org/s/flat-files/unreleased exact_mappings: - dcat:Distribution - fabio:DigitalManifestation is_a: FlatThing slots: - byte_size - checksums - distribution_of - format - kind - media_type - parts slot_usage: kind: name: kind annotations: sh:order: tag: sh:order value: 1 distribution_of: name: distribution_of annotations: sh:order: tag: sh:order value: 2 multivalued: true byte_size: name: byte_size annotations: sh:order: tag: sh:order value: 3 format: name: format annotations: sh:order: tag: sh:order value: 4 media_type: name: media_type annotations: sh:order: tag: sh:order value: 5 checksums: name: checksums annotations: sh:order: tag: sh:order value: 6 parts: name: parts annotations: sh:order: tag: sh:order value: 7 range: NamedDistributionPart inlined: true class_uri: dlflatfiles:Distribution NamedDistributionPart: name: NamedDistributionPart description: An association class for attaching a `locator` as additional information to a `hasPart` relationship. from_schema: https://concepts.datalad.org/s/flat-files/unreleased slots: - locator - roles - object slot_usage: locator: name: locator description: A relative path in POSIX notation. key: true pattern: ^[^/]+.*$ object: name: object range: Distribution required: true class_uri: dlflatfiles:NamedDistributionPart Publication: name: Publication description: A resource that is the output of a publishing process. notes: - There is not slow to indicate authorship. This is left to a PROV attribution. from_schema: https://concepts.datalad.org/s/flat-publications/unreleased exact_mappings: - obo:IAO_0000311 is_a: FlatThing slots: - about - date_published - kind - locator - title - published_at slot_usage: title: name: title annotations: sh:order: tag: sh:order value: 1 required: true published_at: name: published_at annotations: sh:order: tag: sh:order value: 3 locator: name: locator annotations: sh:order: tag: sh:order value: 4 description: A descriptive identifier that locates the publication within the publication venue. This can be a unique name, a numerical key, or another notation that uniquely identifies the subject within that context. kind: name: kind annotations: sh:order: tag: sh:order value: 5 about: name: about annotations: sh:order: tag: sh:order value: 6 multivalued: true date_published: name: date_published annotations: sh:order: tag: sh:order value: 7 class_uri: dlflatpublications:Publication Convention: name: Convention description: A set of agreed, stipulated, or generally accepted standards, norms, social norms, or criteria, often taking the form of a custom. from_schema: https://concepts.datalad.org/s/flat-resources/unreleased exact_mappings: - obo:NCIT_C61300 - obo:GSSO_010111 narrow_mappings: - obo:MS_1000898 - obo:T4FS_0000381 is_a: FlatThing slots: - title - short_name slot_usage: title: name: title annotations: sh:order: tag: sh:order value: 1 short_name: name: short_name annotations: sh:order: tag: sh:order value: 2 description: name: description annotations: sh:order: tag: sh:order value: 3 dash:singleLine: tag: dash:singleLine value: false class_uri: dlflatres:Convention DataItem: name: DataItem description: 'An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements. This is a conceptual entity. A single data item might be available in more than one representation, with differing formats, and serializations.' comments: - The class enables the expressing quantitative and qualitative assessments. For a quantitative value, the numerical value, and a possible unit is given. For a qualitative value, `same_as` is used to identify the quality of the assessment from a controlled vocabulary or standard term. Both approaches can be combined, for example when classifying numerical values into qualitative/ordinal categories. from_schema: https://concepts.datalad.org/s/flat-resources/unreleased exact_mappings: - obo:IAO_0000027 is_a: FlatThing slots: - kind - part_of - quantitative_unit - quantitative_value - same_as slot_usage: part_of: name: part_of range: Dataset multivalued: true same_as: name: same_as description: The value of a qualitative assessment. title: Qualitative value quantitative_value: name: quantitative_value description: The value of a quantitative assessment. title: Quantitative value class_uri: dlflatres:DataItem Dataset: name: Dataset description: A collection of data (data items), published or curated by a single agent. This is a conceptual entity. A single dataset might be available in more than one representation, with differing schematic layouts, formats, and serializations. from_schema: https://concepts.datalad.org/s/flat-resources/unreleased exact_mappings: - dcat:Dataset is_a: FlatThing slots: - title - short_name - part_of slot_usage: title: name: title annotations: sh:order: tag: sh:order value: 1 short_name: name: short_name annotations: sh:order: tag: sh:order value: 2 description: name: description annotations: sh:order: tag: sh:order value: 3 part_of: name: part_of annotations: sh:order: tag: sh:order value: 4 range: Dataset multivalued: true class_uri: dlflatres:Dataset Document: name: Document description: A conceptual entity representing things which a, broadly conceived, "documents. This includes non-textual things like images. A conceputal document is to be distinguished from its physical, or electronic distributions. notes: - The key difference between a dataset and a document is the collection-nature of the dataset (multiple items of a kind in a collection), whereas a document is "one of its kind". A dataset could comprise multiple documents. - A document typically has at least one author. However, there are also generated documents (e.g., a birth certificate) for which this is irrelevant. And there are more roles that could be relevant for a document's provenance. Rather than adding them all, none is provided. from_schema: https://concepts.datalad.org/s/flat-resources/unreleased exact_mappings: - foaf:Document is_a: FlatThing slots: - kind - title - part_of slot_usage: title: name: title annotations: sh:order: tag: sh:order value: 1 kind: name: kind annotations: sh:order: tag: sh:order value: 2 description: name: description annotations: sh:order: tag: sh:order value: 3 part_of: name: part_of annotations: sh:order: tag: sh:order value: 3 range: Document multivalued: true class_uri: dlflatres:Document Grant: name: Grant description: A grant, typically financial or otherwise quantifiable, resources. notes: - A grant is not a document. The associated document would be the grant agreement. from_schema: https://concepts.datalad.org/s/flat-resources/unreleased exact_mappings: - obo:NCIT_C16644 - schema:Grant is_a: FlatThing slots: - howto_acknowledge - title - short_name - part_of slot_usage: title: name: title annotations: sh:order: tag: sh:order value: 1 short_name: name: short_name annotations: sh:order: tag: sh:order value: 2 howto_acknowledge: name: howto_acknowledge annotations: sh:order: tag: sh:order value: 3 dash:singleLine: tag: dash:singleLine value: false description: name: description annotations: sh:order: tag: sh:order value: 4 part_of: name: part_of annotations: sh:order: tag: sh:order value: 5 range: Grant multivalued: true class_uri: dlflatres:Grant Instrument: name: Instrument description: A thing that enables an agent to perform an action. This is typically a device (e.g., a machine to perform a particular type of measurement), but it can also be a questionnaire that is used to perform a particular kind of assessment. An instrument is typically not a "reagent". notes: - It is unclear whether an instrument `name` would provide meaningful and precise information (vs a description or an identifier). There is `display_label`, if the need for a name is just for display purposes (e.g., to say something generic like 'thermometer'). - Slot `name` is added to avoid `display_label` having to carry unique information. from_schema: https://concepts.datalad.org/s/flat-resources/unreleased related_mappings: - schema:instrument narrow_mappings: - obo:NCIT_C62103 is_a: FlatThing slots: - name - kind slot_usage: name: name: name annotations: sh:order: tag: sh:order value: 1 kind: name: kind annotations: sh:order: tag: sh:order value: 2 description: name: description annotations: sh:order: tag: sh:order value: 3 class_uri: dlflatres:Instrument Organization: name: Organization description: A social or legal institution such as a company, a society, or a university. from_schema: https://concepts.datalad.org/s/flat-social/unreleased exact_mappings: - prov:Organization is_a: FlatThing slots: - name - short_name - at_location - part_of slot_usage: name: name: name annotations: sh:order: tag: sh:order value: 1 short_name: name: short_name annotations: sh:order: tag: sh:order value: 2 at_location: name: at_location annotations: sh:order: tag: sh:order value: 3 part_of: name: part_of annotations: sh:order: tag: sh:order value: 4 description: An organization that the subject is part of. range: Organization multivalued: true class_uri: dlflatsocial:Organization Person: name: Person description: Person agents are people, alive, dead, or fictional. from_schema: https://concepts.datalad.org/s/flat-social/unreleased exact_mappings: - foaf:Person - prov:Person is_a: FlatThing slots: - additional_names - family_name - given_name - honorific_name_prefix - honorific_name_suffix - formatted_name slot_usage: family_name: name: family_name annotations: sh:order: tag: sh:order value: 1 given_name: name: given_name annotations: sh:order: tag: sh:order value: 2 additional_names: name: additional_names annotations: sh:order: tag: sh:order value: 3 honorific_name_prefix: name: honorific_name_prefix annotations: sh:order: tag: sh:order value: 4 honorific_name_suffix: name: honorific_name_suffix annotations: sh:order: tag: sh:order value: 5 class_uri: dlflatsocial:Person Project: name: Project description: A collective endeavour of some kind. Typically it is a planned process that is undertaken or attempted to meet some requirement, or to achieve a particular goal. from_schema: https://concepts.datalad.org/s/flat-social/unreleased exact_mappings: - foaf:Project close_mappings: - obo:NCIT_C47885 broad_mappings: - obo:BFO_0000015 is_a: FlatThing slots: - short_name - title - part_of slot_usage: title: name: title annotations: sh:order: tag: sh:order value: 1 short_name: name: short_name annotations: sh:order: tag: sh:order value: 2 part_of: name: part_of multivalued: true class_uri: dlflatsocial:Project Identifier: name: Identifier description: An identifier is a label that uniquely identifies an item in a particular context. Some identifiers are globally unique. All identifiers are unique within their individual scope. from_schema: https://concepts.datalad.org/s/identifiers/unreleased close_mappings: - ADMS:Identifier slots: - creator - notation - schema_type slot_usage: notation: name: notation required: true class_uri: dlidentifiers:Identifier IssuedIdentifier: name: IssuedIdentifier description: An identifier that was issued by a particular agent with a notation that has no (or an undefined) relation to the nature of the identified entity. from_schema: https://concepts.datalad.org/s/identifiers/unreleased see_also: - https://semiceu.github.io/ADMS/releases/2.00/#Identifier exact_mappings: - ADMS:Identifier is_a: Identifier slots: - schema_agency class_uri: dlidentifiers:IssuedIdentifier ComputedIdentifier: name: ComputedIdentifier description: An identifier that has been derived from information on the identified entity. from_schema: https://concepts.datalad.org/s/identifiers/unreleased narrow_mappings: - spdx:Checksum is_a: Identifier class_uri: dlidentifiers:ComputedIdentifier Checksum: name: Checksum description: A Checksum is a value that allows to check the integrity of the contents of a file. Even small changes to the content of the file will change its checksum. This class allows the results of a variety of checksum and cryptographic message digest algorithms to be represented. from_schema: https://concepts.datalad.org/s/identifiers/unreleased exact_mappings: - spdx:Checksum is_a: ComputedIdentifier slot_usage: creator: name: creator description: Identifies the software agent (algorithm) used to produce the subject `Checksum`. exact_mappings: - spdx:algorithm required: true notation: name: notation description: Lower case hexadecimal encoded checksum digest value. exact_mappings: - spdx:checksumValue range: HexBinary required: true class_uri: dlidentifiers:Checksum DOI: name: DOI description: Digital Object Identifier (DOI; ISO 26324), an identifier system governed by the DOI Foundation, where individual identifiers are issued by one of several registration agencies. from_schema: https://concepts.datalad.org/s/identifiers/unreleased is_a: IssuedIdentifier slot_usage: creator: name: creator description: By default, the creator is identified as "https://doi.org". ifabsent: uriorcurie(https://doi.org) notation: name: notation description: The identifier notation is specified without a URL-prefix, or a `doi:` prefix. pattern: (?i)^(?!(?:https?://|doi:)).+$ schema_agency: name: schema_agency description: By default, the schema agency is identified as `DOI Foundation`. ifabsent: string(DOI Foundation) class_uri: dlidentifiers:DOI unique_keys: value: unique_key_name: value unique_key_slots: - notation description: The DOI notation is globally unique within the scope of DOIs ActivityMixin: name: ActivityMixin description: An activity is something that occurs over a period of time and acts upon or with entities; it may include consuming, processing, transforming, modifying, relocating, using, or generating entities. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:Activity mixin: true slots: - started - ended - associated_with - used - informed_by - influenced_by slot_usage: associated_with: name: associated_with range: Association multivalued: true inlined: true inlined_as_list: true ended: name: ended range: End inlined: true influenced_by: name: influenced_by range: Influence multivalued: true inlined: true inlined_as_list: true informed_by: name: informed_by range: Communication multivalued: true inlined: true inlined_as_list: true started: name: started range: Start inlined: true used: name: used range: Usage multivalued: true inlined: true inlined_as_list: true class_uri: dlprovmx:ActivityMixin AgentMixin: name: AgentMixin description: Something that bears some form of responsibility for an activity taking place, for the existence of an entity, or for another agent's activity. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:Agent mixin: true slots: - delegated_by - influenced_by slot_usage: delegated_by: name: delegated_by range: Delegation inlined: true influenced_by: name: influenced_by range: Influence multivalued: true inlined: true inlined_as_list: true class_uri: dlprovmx:AgentMixin EntityMixin: name: EntityMixin description: A physical, digital, conceptual, or other kind of thing with some fixed aspects; entities may be real or imaginary. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:Entity mixin: true slots: - attributed_to - generated_by - derived_from - revision_of - quoted_from - invalidated_by - alternate_of - specialization_of - influenced_by slot_usage: attributed_to: name: attributed_to range: Attribution multivalued: true inlined: true inlined_as_list: true derived_from: name: derived_from range: Derivation multivalued: true inlined: true inlined_as_list: true generated_by: name: generated_by range: Generation inlined: true influenced_by: name: influenced_by range: Influence multivalued: true inlined: true inlined_as_list: true invalidated_by: name: invalidated_by range: Invalidation inlined: true quoted_from: name: quoted_from range: Quotation inlined: true revision_of: name: revision_of range: Revision inlined: true class_uri: dlprovmx:EntityMixin InstantaneousEventMixin: name: InstantaneousEventMixin description: The PROV data model is implicitly based on a notion of instantaneous events (or just events), that mark transitions in the world. Events include generation, usage, or invalidation of entities, as well as starting or ending of activities. This notion of event is not first-class in the data model, but it is useful for explaining its other concepts and its semantics from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:InstantaneousEvent mixin: true slots: - at_location - at_time class_uri: dlprovmx:InstantaneousEventMixin Influence: name: Influence description: Influence is the capacity of an entity, activity, or agent to have an effect on the character, development, or behavior of another by means of usage, start, end, generation, invalidation, communication, derivation, attribution, association, or delegation. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:Influence mixins: - ThingMixin slots: - object - roles slot_usage: object: name: object title: Influencer range: Thing characterized_by: name: characterized_by annotations: sh:order: tag: sh:order value: 100 attributes: name: attributes annotations: sh:order: tag: sh:order value: 110 description: name: description annotations: sh:order: tag: sh:order value: 120 dash:singleLine: tag: dash:singleLine value: false annotations: name: annotations annotations: sh:order: tag: sh:order value: 130 exact_mappings: name: exact_mappings annotations: sh:order: tag: sh:order value: 140 close_mappings: name: close_mappings annotations: sh:order: tag: sh:order value: 141 broad_mappings: name: broad_mappings annotations: sh:order: tag: sh:order value: 142 narrow_mappings: name: narrow_mappings annotations: sh:order: tag: sh:order value: 143 related_mappings: name: related_mappings annotations: sh:order: tag: sh:order value: 144 class_uri: dlprovmx:Influence EntityInfluence: name: EntityInfluence description: EntityInfluence is the capacity of an entity to have an effect on the character, development, or behavior of another by means of usage, start, end, derivation, or other. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:EntityInfluence is_a: Influence slot_usage: object: name: object title: Entity class_uri: dlprovmx:EntityInfluence Usage: name: Usage description: Usage is the beginning of utilizing an entity by an activity. Before usage, the activity had not begun to utilize this entity and could not have been affected by the entity. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:Usage is_a: EntityInfluence mixins: - InstantaneousEventMixin slot_usage: object: name: object description: Entity that was derived from. roles: name: roles description: Roles the entity had with respect to the derivation. at_location: name: at_location description: Location where the usage took place. at_time: name: at_time description: Timepoint when the usage happened. class_uri: dlprovmx:Usage Start: name: Start description: Start is when an activity is deemed to have been started by an entity, known as trigger. The activity did not exist before its start. Any usage, generation, or invalidation involving an activity follows the activity's start. A start may refer to a trigger entity that set off the activity, or to an activity, known as starter, that generated the trigger. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:Start is_a: EntityInfluence mixins: - InstantaneousEventMixin slot_usage: object: name: object title: Trigger class_uri: dlprovmx:Start End: name: End description: End is when an activity is deemed to have been ended by an entity, known as trigger. The activity no longer exists after its end. Any usage, generation, or invalidation involving an activity precedes the activity's end. An end may refer to a trigger entity that terminated the activity, or to an activity, known as ender that generated the trigger. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:End is_a: EntityInfluence mixins: - InstantaneousEventMixin slot_usage: object: name: object title: Trigger class_uri: dlprovmx:End Derivation: name: Derivation description: A derivation is a transformation of an entity into another, an update of an entity resulting in a new one, or the construction of a new entity based on a pre-existing entity. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:Derivation is_a: EntityInfluence slots: - generated_by - used slot_usage: object: name: object description: Entity that was derived from. roles: name: roles description: Roles the entity had with respect to the derivation. generated_by: name: generated_by description: Activity that generated the derived entity. range: Generation inlined: true used: name: used description: Entities used for the derivation (e.g., instruments). range: Usage multivalued: true inlined: true inlined_as_list: true class_uri: dlprovmx:Derivation Quotation: name: Quotation description: A quotation is the repeat of (some or all of) an entity, such as text or image, by someone who may or may not be its original author. Quotation is a particular case of derivation. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:Quotation is_a: Derivation class_uri: dlprovmx:Quotation Revision: name: Revision description: A revision is a derivation for which the resulting entity is a revised version of some original. The implication here is that the resulting entity contains substantial content from the original. Revision is a particular case of derivation. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:Revision is_a: Derivation class_uri: dlprovmx:Revision ActivityInfluence: name: ActivityInfluence description: ActivitiyInfluence is the capacity of an activity to have an effect on the character, development, or behavior of another by means of generation, invalidation, communication, or other. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:ActivityInfluence is_a: Influence slot_usage: object: name: object title: Activity class_uri: dlprovmx:ActivityInfluence Generation: name: Generation description: Generation is the completion of production of a new entity by an activity. This entity did not exist before generation and becomes available for usage after this generation. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:Generation is_a: ActivityInfluence mixins: - InstantaneousEventMixin slot_usage: object: name: object description: Generating activity. roles: name: roles description: Roles the activity had with respect to the generation. at_location: name: at_location description: Location where the generating activity took place. at_time: name: at_time description: Timepoint when the generating activity happened. class_uri: dlprovmx:Generation Communication: name: Communication description: Communication is the exchange of an entity by two activities, one activity using the entity generated by the other. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:Communication is_a: ActivityInfluence class_uri: dlprovmx:Communication Invalidation: name: Invalidation description: Invalidation is the start of the destruction, cessation, or expiry of an existing entity by an activity. The entity is no longer available for use (or further invalidation) after invalidation. Any generation or usage of an entity precedes its invalidation. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:Invalidation is_a: ActivityInfluence mixins: - InstantaneousEventMixin class_uri: dlprovmx:Invalidation AgentInfluence: name: AgentInfluence description: AgentInfluence is the capacity of an agent to have an effect on the character, development, or behavior of another by means of attribution, association, delegation, or other. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:AgentInfluence is_a: Influence slot_usage: object: name: object title: Agent class_uri: dlprovmx:AgentInfluence Attribution: name: Attribution description: Attribution is the ascribing of an entity to an agent. When an entity e is attributed to agent ag, entity e was generated by some unspecified activity that in turn was associated to agent ag. Thus, this relation is useful when the activity is not known, or irrelevant. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:Attribution is_a: AgentInfluence slot_usage: object: name: object description: Agent the entity was attributed to. roles: name: roles description: Roles the agent had with respect to the entity. class_uri: dlprovmx:Attribution Association: name: Association description: An activity association is an assignment of responsibility to an agent for an activity, indicating that the agent had a role in the activity. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:Association is_a: AgentInfluence slots: - started - ended class_uri: dlprovmx:Association Delegation: name: Delegation description: Delegation is the assignment of authority and responsibility to an agent (by itself or by another agent) to carry out a specific activity as a delegate or representative, while the agent it acts on behalf of retains some responsibility for the outcome of the delegated work. For example, a student acted on behalf of his supervisor, who acted on behalf of the department chair, who acted on behalf of the university; all those agents are responsible in some way for the activity that took place but we do not say explicitly who bears responsibility and to what degree. from_schema: https://concepts.datalad.org/s/prov-mixin/unreleased exact_mappings: - prov:Delegation is_a: AgentInfluence slots: - started - ended class_uri: dlprovmx:Delegation Study: name: Study description: 'A planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s). An investigational endeavour that involves research, enabled by a project. The study relates to the scholarly and practical aspects of conducting the research itself, including the hypotheses being investigated, the data being gathered and analysed, the interpretations being drawn from the data, and the results obtained. In contrast, a project that enables it encompasses the administrative aspects of undertaking the endeavour, including the funding obtained, the people involved, and the management of the project in terms of deadlines and deliverables.' from_schema: https://concepts.datalad.org/s/flat-study/unreleased exact_mappings: - obo:OBI_0000066 - sio:SIO_001066 - FRAPO:Investigation narrow_mappings: - sio:SIO_000994 - obo:NCIT_C15206 broad_mappings: - prov:Activity - obo:BFO_0000015 is_a: FlatThing slots: - associated_with - dimensions - factors - instruments - name - part_of slot_usage: name: name: name annotations: sh:order: tag: sh:order value: 1 factors: name: factors annotations: sh:order: tag: sh:order value: 2 instruments: name: instruments annotations: sh:order: tag: sh:order value: 3 range: Thing dimensions: name: dimensions annotations: sh:order: tag: sh:order value: 4 part_of: name: part_of annotations: sh:order: tag: sh:order value: 5 range: Study multivalued: true associated_with: name: associated_with annotations: sh:order: tag: sh:order value: 6 multivalued: true description: name: description annotations: sh:order: tag: sh:order value: 7 dash:singleLine: tag: dash:singleLine value: false class_uri: dlflatstudy:Study Subject: name: Subject description: A subject is an entity being investigated in a study. This is a contextual entity. One and the same entity can be different subjects in two different studies. from_schema: https://concepts.datalad.org/s/flat-study/unreleased is_a: FlatThing slots: - derived_from - kind - name - study slot_usage: study: name: study annotations: sh:order: tag: sh:order value: 1 range: Study name: name: name annotations: sh:order: tag: sh:order value: 2 kind: name: kind annotations: sh:order: tag: sh:order value: 3 description: A classifier that identifies the nature/type of a subject. For specimen (a subject derived/taken from another subject), this classifier should be more precise than the classifier of the source subject. title: Type description: name: description annotations: sh:order: tag: sh:order value: 4 dash:singleLine: tag: dash:singleLine value: false derived_from: name: derived_from annotations: sh:order: tag: sh:order value: 5 range: Subject class_uri: dlflatstudy:Subject source_file: src/demo-research-assets/unreleased.yaml