name: demo-empirical-data-schema description: 'Demo schema for a generic data annotation use case. This schema is deliberately not using the many schema building block available for building submission-focused (FLAT) schemas. Instead it shows how to build something custom solely based on the fundational [`flat`](https://concepts.datalad.org/s/flat/schema). All class names are prefixed with `XYZ` to label them as use-case specific. More information may be available on the schema''s [about page](about). The schema definition is available as - [JSON-LD context](../unreleased.jsonld) - [LinkML YAML](../unreleased.yaml) - [LinkML YAML (static/resolved)](../unreleased.static.yaml) - [OWL TTL](../unreleased.owl.ttl) - [SHACL TTL](../unreleased.shacl.ttl) ' title: Data models for generic empirical data comments: - ALL CONTENT HERE IS UNRELEASED AND MAY CHANGE ANY TIME status: eunal:concept-status/DRAFT id: https://concepts.datalad.org/s/demo-empirical-data/unreleased version: UNRELEASED license: CC-BY-4.0 prefixes: ADMS: prefix_prefix: ADMS prefix_reference: http://www.w3.org/ns/adms# dash: prefix_prefix: dash prefix_reference: http://datashapes.org/dash# dcterms: prefix_prefix: dcterms prefix_reference: http://purl.org/dc/terms/ dldemoed: prefix_prefix: dldemoed prefix_reference: https://concepts.datalad.org/s/demo-empirical-data/unreleased/ dlflat: prefix_prefix: dlflat prefix_reference: https://concepts.datalad.org/s/flat/unreleased/ dlidentifiers: prefix_prefix: dlidentifiers prefix_reference: https://concepts.datalad.org/s/identifiers/unreleased/ dlschemas: prefix_prefix: dlschemas prefix_reference: https://concepts.datalad.org/s/ dlthings: prefix_prefix: dlthings prefix_reference: https://concepts.datalad.org/s/things/v1/ dltypes: prefix_prefix: dltypes prefix_reference: https://concepts.datalad.org/s/types/v1/ eunal: prefix_prefix: eunal prefix_reference: http://publications.europa.eu/resource/authority/ linkml: prefix_prefix: linkml prefix_reference: https://w3id.org/linkml/ orcid: prefix_prefix: orcid prefix_reference: https://orcid.org/ owl: prefix_prefix: owl prefix_reference: http://www.w3.org/2002/07/owl# prov: prefix_prefix: prov prefix_reference: http://www.w3.org/ns/prov# rdf: prefix_prefix: rdf prefix_reference: http://www.w3.org/1999/02/22-rdf-syntax-ns# rdfs: prefix_prefix: rdfs prefix_reference: http://www.w3.org/2000/01/rdf-schema# sh: prefix_prefix: sh prefix_reference: http://www.w3.org/ns/shacl# sio: prefix_prefix: sio prefix_reference: http://semanticscience.org/resource/ skos: prefix_prefix: skos prefix_reference: http://www.w3.org/2004/02/skos/core# spdx: prefix_prefix: spdx prefix_reference: http://spdx.org/rdf/terms# w3ctr: prefix_prefix: w3ctr prefix_reference: https://www.w3.org/TR/ xsd: prefix_prefix: xsd prefix_reference: http://www.w3.org/2001/XMLSchema# schema: prefix_prefix: schema prefix_reference: http://schema.org/ shex: prefix_prefix: shex prefix_reference: http://www.w3.org/ns/shex# bibo: prefix_prefix: bibo prefix_reference: http://purl.org/ontology/bibo/ dcat: prefix_prefix: dcat prefix_reference: http://www.w3.org/ns/dcat# ex: prefix_prefix: ex prefix_reference: http://example.org/ obo: prefix_prefix: obo prefix_reference: http://purl.obolibrary.org/obo/ exthisns: prefix_prefix: exthisns prefix_reference: https://example.org/ns/ emit_prefixes: - dlflat - dlidentifiers - dlthings - dltypes - rdf - rdfs - skos - xsd default_prefix: dldemoed types: EmailAddress: name: EmailAddress description: RFC 5322 compliant email address notes: - The validation regex is taken from https://stackoverflow.com/a/201378 - The regex is single-quoted for YAML encoding, hence all inner "'" have been doubled from_schema: https://concepts.datalad.org/s/types/v1 typeof: string base: str uri: dltypes:EmailAddress pattern: (?:[A-Za-z0-9!#$%&'*+/=?^_`{|}~-]+(?:\.[A-Za-z0-9!#$%&'*+/=?^_`{|}~-]+)*|"(?:[\x01-\x08\x0b\x0c\x0e-\x1f\x21\x23-\x5b\x5d-\x7f]|\\[\x01-\x09\x0b\x0c\x0e-\x7f])*")@(?:(?:[A-Za-z0-9](?:[A-Za-z0-9-]*[A-Za-z0-9])?\.)+[A-Za-z0-9](?:[A-Za-z0-9-]*[A-Za-z0-9])?|\[(?:(?:(2(5[0-5]|[0-4][0-9])|1[0-9][0-9]|[1-9]?[0-9]))\.){3}(?:(2(5[0-5]|[0-4][0-9])|1[0-9][0-9]|[1-9]?[0-9])|[A-Za-z0-9-]*[A-Za-z0-9]:(?:[\x01-\x08\x0b\x0c\x0e-\x1f\x21-\x5a\x53-\x7f]|\\[\x01-\x09\x0b\x0c\x0e-\x7f])+)\]) HexBinary: name: HexBinary description: hex-encoded binary data. from_schema: https://concepts.datalad.org/s/types/v1 typeof: string base: str uri: xsd:hexBinary pattern: ^[a-fA-F0-9]+$ NodeUriOrCurie: name: NodeUriOrCurie description: A type referencing an graph node. This is like `uriorcurie`, but in an RDF export leads to the desirable `rdf.type` declaration, rather then an `rdf.literal` of the corresponding URI. from_schema: https://concepts.datalad.org/s/types/v1 typeof: uriorcurie base: str uri: rdfs:Resource NonNegativeInteger: name: NonNegativeInteger description: An integer notes: - Integer with minimum (inclusive) value of zero, i.e. the standard mathematical concept of the non-negative integers. from_schema: https://concepts.datalad.org/s/types/v1 broad_mappings: - schema:Integer typeof: integer base: int uri: xsd:nonNegativeInteger string: name: string description: A character string notes: - In RDF serializations, a slot with range of string is treated as a literal or type xsd:string. If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "string". from_schema: https://w3id.org/linkml/types exact_mappings: - schema:Text base: str uri: xsd:string integer: name: integer description: An integer notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "integer". from_schema: https://w3id.org/linkml/types exact_mappings: - schema:Integer base: int uri: xsd:integer boolean: name: boolean description: A binary (true or false) value notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "boolean". from_schema: https://w3id.org/linkml/types exact_mappings: - schema:Boolean base: Bool uri: xsd:boolean repr: bool float: name: float description: A real number that conforms to the xsd:float specification notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "float". from_schema: https://w3id.org/linkml/types exact_mappings: - schema:Float base: float uri: xsd:float double: name: double description: A real number that conforms to the xsd:double specification notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "double". from_schema: https://w3id.org/linkml/types close_mappings: - schema:Float base: float uri: xsd:double decimal: name: decimal description: A real number with arbitrary precision that conforms to the xsd:decimal specification notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "decimal". from_schema: https://w3id.org/linkml/types broad_mappings: - schema:Number base: Decimal uri: xsd:decimal time: name: time description: A time object represents a (local) time of day, independent of any particular day notes: - URI is dateTime because OWL reasoners do not work with straight date or time - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "time". from_schema: https://w3id.org/linkml/types exact_mappings: - schema:Time base: XSDTime uri: xsd:time repr: str date: name: date description: a date (year, month and day) in an idealized calendar notes: - URI is dateTime because OWL reasoners don't work with straight date or time - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "date". from_schema: https://w3id.org/linkml/types exact_mappings: - schema:Date base: XSDDate uri: xsd:date repr: str datetime: name: datetime description: The combination of a date and time notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "datetime". from_schema: https://w3id.org/linkml/types exact_mappings: - schema:DateTime base: XSDDateTime uri: xsd:dateTime repr: str date_or_datetime: name: date_or_datetime description: Either a date or a datetime notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "date_or_datetime". from_schema: https://w3id.org/linkml/types base: str uri: linkml:DateOrDatetime repr: str uriorcurie: name: uriorcurie description: a URI or a CURIE notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "uriorcurie". from_schema: https://w3id.org/linkml/types base: URIorCURIE uri: xsd:anyURI repr: str curie: name: curie conforms_to: https://www.w3.org/TR/curie/ description: a compact URI notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "curie". comments: - in RDF serializations this MUST be expanded to a URI - in non-RDF serializations MAY be serialized as the compact representation from_schema: https://w3id.org/linkml/types base: Curie uri: xsd:string repr: str uri: name: uri conforms_to: https://www.ietf.org/rfc/rfc3987.txt description: a complete URI notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "uri". comments: - in RDF serializations a slot with range of uri is treated as a literal or type xsd:anyURI unless it is an identifier or a reference to an identifier, in which case it is translated directly to a node from_schema: https://w3id.org/linkml/types close_mappings: - schema:URL base: URI uri: xsd:anyURI repr: str ncname: name: ncname description: Prefix part of CURIE notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "ncname". from_schema: https://w3id.org/linkml/types base: NCName uri: xsd:string repr: str objectidentifier: name: objectidentifier description: A URI or CURIE that represents an object in the model. notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "objectidentifier". comments: - Used for inheritance and type checking from_schema: https://w3id.org/linkml/types base: ElementIdentifier uri: shex:iri repr: str nodeidentifier: name: nodeidentifier description: A URI, CURIE or BNODE that represents a node in a model. notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "nodeidentifier". from_schema: https://w3id.org/linkml/types base: NodeIdentifier uri: shex:nonLiteral repr: str jsonpointer: name: jsonpointer conforms_to: https://datatracker.ietf.org/doc/html/rfc6901 description: A string encoding a JSON Pointer. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to a valid object within the current instance document when encoded in tree form. notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "jsonpointer". from_schema: https://w3id.org/linkml/types base: str uri: xsd:string repr: str jsonpath: name: jsonpath conforms_to: https://www.ietf.org/archive/id/draft-goessner-dispatch-jsonpath-00.html description: A string encoding a JSON Path. The value of the string MUST conform to JSON Point syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded in tree form. notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "jsonpath". from_schema: https://w3id.org/linkml/types base: str uri: xsd:string repr: str sparqlpath: name: sparqlpath conforms_to: https://www.w3.org/TR/sparql11-query/#propertypaths description: A string encoding a SPARQL Property Path. The value of the string MUST conform to SPARQL syntax and SHOULD dereference to zero or more valid objects within the current instance document when encoded as RDF. notes: - If you are authoring schemas in LinkML YAML, the type is referenced with the lower case "sparqlpath". from_schema: https://w3id.org/linkml/types base: str uri: xsd:string repr: str enums: XYZOrganizationType: name: XYZOrganizationType description: Classification of organizations. from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased enum_uri: dldemoed:XYZOrganizationType permissible_values: team: text: team description: Smallest unit of an organized group. group: text: group description: A group may consist of more than one team. division: text: division description: A unit within a parent organization that comprises multiple groups. institute: text: institute description: A topical unit comprising multiple divisions or groups. researchcenter: text: researchcenter description: An institute primarily focused on research (as opposed to education). researchorganization: text: researchorganization description: An organization primarily focused on research (as opposed to education), possibly comprising multiple research centers. faculty: text: faculty description: A division of a university or college college: text: college description: An institution with a primary focus on undergraduate education. university: text: university description: An institution with a focus on both undergraduate and graduate education. nonprofit: text: nonprofit description: A private entity operated for a collective, public or social benefit. business: text: business description: A company aiming to generate profit. slots: additional_names: name: additional_names description: Additional name(s) associated with the subject, such as one or more middle names, or a nick name. title: Additional names from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:additional_names range: string multivalued: true curation_comments: name: curation_comments annotations: dash:singleLine: tag: dash:singleLine value: false description: A comment about a metadata record either providing additional information for a record curation, or leaving a comment after curation occurred. This can be used to include information that is deemed relevant, but could not be expressed in the provided fields. title: Comments from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:curation_comments range: string multivalued: true emails: name: emails description: Associated email address. title: Email(s) from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:emails range: EmailAddress multivalued: true family_name: name: family_name description: The (inherited) family name of the subject. In many Western languages this is the "last name". title: Family name from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:family_name range: string given_name: name: given_name description: The given (non-inherited) name of the subject. title: Given name from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:given_name range: string honorific_name_prefix: name: honorific_name_prefix description: The honorific prefix(es) of the subject's name. For example, (academic/formal) titles like "Mrs", or "Dr", "Dame". title: Title or prefix from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:honorific_name_prefix range: string honorific_name_suffix: name: honorific_name_suffix description: The honorific suffix(es) of the subject's name. For example, generation labels ("III"), or indicators of an academic degree, a profession, or a position ("MD", "BA"). title: Suffix from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:honorific_name_suffix range: string leaders: name: leaders description: Person(s) that are formal or informal leaders of the subject. title: Leader(s) from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:leaders range: XYZPerson multivalued: true member_of: name: member_of description: The subject is a member of an organization. title: Member of from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:member_of range: XYZOrganization multivalued: true name: name: name description: Name of the subject. title: Name from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:name range: string orcid: name: orcid description: Associated ORCID identifier (see https://orcid.org). title: ORCID from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:orcid range: string pattern: ^\d{4}-\d{4}-\d{4}-\d{3}[0-9X]{1}$ organization_type: name: organization_type description: Type of an organization. title: Organization type from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:organization_type range: XYZOrganizationType parent_organization: name: parent_organization description: An organization the subject is a part of. title: Parent organization from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:parent_organization range: XYZOrganization record_contact: name: record_contact description: Person to contact regarding questions about information in this metadata record. title: Record contact from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:record_contact range: XYZPerson short_name: name: short_name description: A shortened name for the subject. For example, an acronym, initialism, nickname, or other abbreviation of the name or title. title: Short name from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:short_name range: string byte_size: name: byte_size description: The size of the subject in bytes. from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased exact_mappings: - dcat:byteSize slot_uri: dldemoed:byte_size range: NonNegativeInteger checksums: name: checksums description: The checksum property provides a mechanism that can be used to verify that the contents of a file or package have not changed. from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased exact_mappings: - spdx:checksum slot_uri: dldemoed:checksums range: Checksum multivalued: true inlined: true inlined_as_list: true derived_from: name: derived_from description: A entity from which the subject was created through some kind of process. title: Derived from from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased exact_mappings: - prov:wasDerivedFrom slot_uri: dldemoed:derived_from dimensions: name: dimensions description: Associated outcome variables. title: Outcomes variables from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:dimensions range: XYZDimension multivalued: true distribution_of: name: distribution_of description: The resource that the subject is a distribution of. from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased broad_mappings: - sio:SIO_000426 slot_uri: dldemoed:distribution_of range: XYZDataItem factors: name: factors description: Factors that influence the subject matter. title: Influencing factors from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:factors range: XYZFactor multivalued: true factor_level_of: name: factor_level_of description: A factor the subject is a (sub)level of. title: Level of from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:factor_level_of range: XYZFactor format: name: format description: The file format of a distribution. notes: - When type of the distribution is defined by IANA, `media_type` should be used. from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased exact_mappings: - dcterms:format slot_uri: dldemoed:format range: XYZFileFormat generated_by: name: generated_by description: Identification of the process that led to the production of the subject entity. title: Generated by from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased exact_mappings: - prov:wasGeneratedBy slot_uri: dldemoed:generated_by range: XYZStudyActivity implements: name: implements description: Protocols or standards that are relevant for the subject. For example particular standard operating procedures, data acquisition techniques, or organization standards. title: Implemented protocols from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased broad_mappings: - dcterms:conformsTo slot_uri: dldemoed:implements range: XYZProtocol multivalued: true instruments: name: instruments description: Instruments employed in a study activity. This could be physical devices, but also software tools. title: Used instruments from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:instruments range: XYZInstrument multivalued: true media_type: name: media_type description: The media type of a distribution as defined by IANA examples: - value: text/csv from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased see_also: - https://www.iana.org/assignments/media-types exact_mappings: - dcat:mediaType slot_uri: dldemoed:media_type range: string part_of: name: part_of description: The entity that the subject is a part of. A core relation that holds between a part and its whole. from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased exact_mappings: - obo:BFO_0000050 - dcterms:isPartOf slot_uri: dldemoed:part_of subject_type: name: subject_type description: A classifier that identifies the nature/type of a subject. For specimen (a subject derived/taken from another subject), this classifier should be more precise than the classifier of the source subject. title: Type from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:subject_type range: XYZSubjectType study: name: study description: The study in which the subject took place or existed. title: Study context from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:study range: XYZStudy subjects: name: subjects description: Studied subjects. title: Studied subjects from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:subjects range: XYZSubject multivalued: true unit: name: unit description: Unit of the quantitative value associated with the subject entity. title: Unit from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased slot_uri: dldemoed:unit range: XYZUnit schema_type: name: schema_type description: State that the subject is an instance of a particular schema class. Typically, no explicit value needs to be assigned to this slot, because it matches the class type of a particular record. However, this slots can be used as a type designator of a schema element for validation and schema structure handling purposes. This is used to indicate specialized schema classes for properties that accept a hierarchy of classes as their range. from_schema: https://concepts.datalad.org/s/types/v1 exact_mappings: - dcterms:type slot_uri: rdf:type designates_type: true range: NodeUriOrCurie broad_mappings: name: broad_mappings description: A list of terms from different schemas or terminology systems that have broader meaning. title: Broad mappings from_schema: https://concepts.datalad.org/s/things/v1 is_a: mappings slot_uri: skos:broadMatch range: uriorcurie multivalued: true close_mappings: name: close_mappings description: A list of terms from different schemas or terminology systems that have close meaning. title: Close mappings from_schema: https://concepts.datalad.org/s/things/v1 is_a: mappings slot_uri: skos:closeMatch range: uriorcurie multivalued: true description: name: description annotations: dash:singleLine: tag: dash:singleLine value: false description: A free-text account of the subject. title: Description from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - dcterms:description - rdfs:comment broad_mappings: - obo:IAO_0000300 slot_uri: dlthings:description range: string exact_mappings: name: exact_mappings description: A list of terms from different schemas or terminology systems that have identical meaning. title: Exact mappings from_schema: https://concepts.datalad.org/s/things/v1 is_a: mappings slot_uri: skos:exactMatch range: uriorcurie multivalued: true attributes: name: attributes description: Declares a relation that associates a `Thing` (or another attribute) with an attribute, where an attribute is an intrinsic characteristic, such as a quality, capability, disposition, function, or is an externally derived attribute determined from some descriptor (e.g. a quantity, position, label/identifier). Technically, this declaration is done via an `AttributeSpecification` that combines a `predicate` with a value declaration and the attribute-related slots of a `Thing`. Importantly, such attributes are declared inline, because they do not have a unique identifier. If an identifier is available, a `Thing` declaration (see `relation`), and a qualification of that relationship via a `Statement` (see `characterized_by`) should be preferred. title: Attributes from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - sio:SIO_000008 slot_uri: dlthings:attributes range: AttributeSpecification multivalued: true inlined: true inlined_as_list: true pid: name: pid description: Persistent and globally unique identifier of a `Thing`. title: Persistent identifier from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - dcterms:identifier - schema:identifier - ADMS:identifier slot_uri: dlthings:pid identifier: true range: uriorcurie characterized_by: name: characterized_by description: Qualifies relationships between a subject `Thing` and an object `Thing` with a `Statement` declaring a `predicate` on the nature of the relationship. title: Is characterized by from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - obo:RO_0000053 slot_uri: dlthings:characterized_by range: Statement multivalued: true inlined: true inlined_as_list: true mappings: name: mappings description: A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. from_schema: https://concepts.datalad.org/s/things/v1 slot_uri: skos:mappingRelation range: uriorcurie multivalued: true annotations: name: annotations description: A record of properties of the metadata record on a subject, a collection of tag/text tuples with the semantics of OWL Annotation. title: Annotations from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - obo:NCIT_C44272 slot_uri: dlthings:annotations range: Annotation multivalued: true inlined: true annotation_tag: name: annotation_tag description: A tag identifying an annotation. from_schema: https://concepts.datalad.org/s/things/v1 slot_uri: dlthings:annotation_tag range: Thing annotation_value: name: annotation_value description: The actual annotation. from_schema: https://concepts.datalad.org/s/things/v1 slot_uri: dlthings:annotation_value range: string narrow_mappings: name: narrow_mappings description: A list of terms from different schemas or terminology systems that have narrower meaning. title: Narrow mappings from_schema: https://concepts.datalad.org/s/things/v1 is_a: mappings slot_uri: skos:narrowMatch range: uriorcurie multivalued: true object: name: object description: Reference to a `Thing` within a `Statement`. notes: - We do not declare a range here to be able to tighten the range in subclasses of class that need a particular range. This appears to be working around a linkml limitation. from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - rdf:object slot_uri: rdf:object relational_role: text: OBJECT description: a slot with this role connects a relationship to its object/target node meaning: http://www.w3.org/1999/02/22-rdf-syntax-ns#object multivalued: false inlined: false predicate: name: predicate description: Reference to a `Property` within a `Statement`. from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - rdf:predicate slot_uri: rdf:predicate relational_role: text: PREDICATE description: a slot with this role connects a relationship to its predicate/property meaning: http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate range: Property multivalued: false inlined: false range: name: range description: Declares that the value of a `Thing` or `AttributeSpecification` are instances of a particular class. from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - rdfs:range slot_uri: rdfs:range range: uriorcurie related_mappings: name: related_mappings description: A list of terms from different schemas or terminology systems that have related meaning. title: Related mappings from_schema: https://concepts.datalad.org/s/things/v1 is_a: mappings slot_uri: skos:relatedMatch range: uriorcurie multivalued: true relations: name: relations description: Declares an unqualified relation of the subject `Thing` to another `Thing`. This schema slot is used to define related things inline. If such a definition is not needed. A qualified relationship can be declared directly using the `characterized_by` slot. title: Relations from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - dcat:relation - dcterms:relation domain: Thing slot_uri: dlthings:relation symmetric: true relational_role: text: OBJECT description: a slot with this role connects a relationship to its object/target node meaning: http://www.w3.org/1999/02/22-rdf-syntax-ns#object range: Thing multivalued: true inlined: true inlined_as_list: false value: name: value description: Value that is a direct representation of a thing. from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - rdf:value slot_uri: rdf:value relational_role: text: OBJECT description: a slot with this role connects a relationship to its object/target node meaning: http://www.w3.org/1999/02/22-rdf-syntax-ns#object range: string creator: name: creator description: An agent responsible for making an entity. notes: - The `range` is only `uriorcurie` here (and not `Thing`), because we have an `ifabsent` declaration for DOIs that only work with this type. And even for that it needs a patch. from_schema: https://concepts.datalad.org/s/identifiers/unreleased exact_mappings: - dcterms:creator slot_uri: dlidentifiers:creator range: uriorcurie identifiers: name: identifiers description: An unambiguous reference to the subject within a given context. from_schema: https://concepts.datalad.org/s/identifiers/unreleased exact_mappings: - dcterms:identifier - schema:identifier - ADMS:identifier slot_uri: dlidentifiers:identifier range: Identifier multivalued: true inlined: true inlined_as_list: true notation: name: notation description: String of characters such as "T58:5" or "30:4833" used to uniquely identify a concept within the scope of a given concept scheme. from_schema: https://concepts.datalad.org/s/identifiers/unreleased exact_mappings: - skos:notation slot_uri: dlidentifiers:notation range: string schema_agency: name: schema_agency description: Name of the agency that issued an identifier. from_schema: https://concepts.datalad.org/s/identifiers/unreleased exact_mappings: - ADMS:schemaAgency slot_uri: dlidentifiers:schema_agency range: string display_label: name: display_label description: Label that can be shown when the metadata record is displayed as an item. title: Record display label from_schema: https://concepts.datalad.org/s/flat/unreleased slot_uri: skos:prefLabel range: string display_note: name: display_note annotations: dash:singleLine: tag: dash:singleLine value: false description: Note that can be shown when the record is displayed as an item. This is typically longer than a label. title: Record display note from_schema: https://concepts.datalad.org/s/flat/unreleased slot_uri: skos:note range: string editorial_note: name: editorial_note annotations: dash:singleLine: tag: dash:singleLine value: false description: A comment about a metadata record either providing additional information for a record curation, or leaving a comment after curation occurred. This can be used to include information that is deemed relevant, but could not be expressed in the provided fields. title: Editorial note from_schema: https://concepts.datalad.org/s/flat/unreleased slot_uri: skos:editorialNote range: string multivalued: true classes: XYZPerson: name: XYZPerson description: A person. title: Person from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased is_a: FlatThing slots: - additional_names - family_name - given_name - honorific_name_prefix - honorific_name_suffix - emails - member_of - orcid slot_usage: family_name: name: family_name annotations: sh:order: tag: sh:order value: 1 recommended: true given_name: name: given_name annotations: sh:order: tag: sh:order value: 2 recommended: true additional_names: name: additional_names annotations: sh:order: tag: sh:order value: 3 honorific_name_prefix: name: honorific_name_prefix annotations: sh:order: tag: sh:order value: 4 honorific_name_suffix: name: honorific_name_suffix annotations: sh:order: tag: sh:order value: 5 emails: name: emails annotations: sh:order: tag: sh:order value: 6 recommended: true orcid: name: orcid annotations: sh:order: tag: sh:order value: 7 recommended: true member_of: name: member_of annotations: sh:order: tag: sh:order value: 8 display_label: name: display_label annotations: sh:order: tag: sh:order value: 9 recommended: true class_uri: dldemoed:XYZPerson XYZOrganization: name: XYZOrganization description: A social or legal institution such as a company, a society, or a university. title: Organization from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased is_a: FlatThing slots: - name - short_name - parent_organization - organization_type - leaders slot_usage: name: name: name annotations: sh:order: tag: sh:order value: 1 required: true short_name: name: short_name annotations: sh:order: tag: sh:order value: 2 organization_type: name: organization_type annotations: sh:order: tag: sh:order value: 3 leaders: name: leaders annotations: sh:order: tag: sh:order value: 4 parent_organization: name: parent_organization annotations: sh:order: tag: sh:order value: 5 display_label: name: display_label annotations: sh:order: tag: sh:order value: 6 recommended: true class_uri: dldemoed:XYZOrganization XYZDataset: name: XYZDataset description: A collection of data, published or curated by a single agent. This is a conceptual entity. A single dataset might be available in more than one representation, with differing schematic layouts, formats, and serializations. title: Dataset from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased is_a: FlatThing slots: - dimensions - generated_by - name - part_of - short_name slot_usage: name: name: name annotations: sh:order: tag: sh:order value: 1 recommended: true short_name: name: short_name annotations: sh:order: tag: sh:order value: 2 part_of: name: part_of annotations: sh:order: tag: sh:order value: 3 range: XYZDataset dimensions: name: dimensions annotations: sh:order: tag: sh:order value: 4 recommended: true description: name: description annotations: sh:order: tag: sh:order value: 5 dash:singleLine: tag: dash:singleLine value: false generated_by: name: generated_by annotations: sh:order: tag: sh:order value: 6 display_label: name: display_label annotations: sh:order: tag: sh:order value: 7 recommended: true class_uri: dldemoed:XYZDataset XYZDataItem: name: XYZDataItem description: A single data item, the building block of Datasets. This is a conceptual entity. A DataItem might be available in more than one representation, with differing formats, and serializations. title: DataItem from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased is_a: FlatThing slots: - derived_from - dimensions - generated_by - part_of - unit - value slot_usage: part_of: name: part_of annotations: sh:order: tag: sh:order value: 1 range: XYZDataset required: true generated_by: name: generated_by annotations: sh:order: tag: sh:order value: 2 required: true derived_from: name: derived_from annotations: sh:order: tag: sh:order value: 3 range: XYZSubject value: name: value annotations: sh:order: tag: sh:order value: 4 unit: name: unit annotations: sh:order: tag: sh:order value: 5 dimensions: name: dimensions annotations: sh:order: tag: sh:order value: 6 recommended: true description: name: description annotations: sh:order: tag: sh:order value: 7 dash:singleLine: tag: dash:singleLine value: false display_label: name: display_label annotations: sh:order: tag: sh:order value: 8 recommended: true class_uri: dldemoed:XYZDataItem XYZDistribution: name: XYZDistribution description: A specific representation of a data item, which may come in the form of an electronic file, or an archive or directory of many files, may be standalone or part of a larger collection. title: Distribution from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased is_a: FlatThing slots: - byte_size - checksums - distribution_of - format - media_type - name - part_of slot_usage: distribution_of: name: distribution_of annotations: sh:order: tag: sh:order value: 1 required: true any_of: - range: XYZDataset - range: XYZDataItem name: name: name annotations: sh:order: tag: sh:order value: 2 description: (File) name of the distribution. If the distribution is part of another distribution, the name is interpreted as a relative path within the parent distribution. This relative path may contain intermediate directories, and must be encoded using POSIX conventions. recommended: true part_of: name: part_of annotations: sh:order: tag: sh:order value: 3 range: XYZDistribution byte_size: name: byte_size annotations: sh:order: tag: sh:order value: 4 recommended: true format: name: format annotations: sh:order: tag: sh:order value: 5 media_type: name: media_type annotations: sh:order: tag: sh:order value: 6 checksums: name: checksums annotations: sh:order: tag: sh:order value: 7 class_uri: dldemoed:XYZDistribution XYZDimension: name: XYZDimension description: A dependent or outcome variable. title: Dimension from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased is_a: FlatThing slots: - name - short_name slot_usage: name: name: name annotations: sh:order: tag: sh:order value: 1 recommended: true short_name: name: short_name annotations: sh:order: tag: sh:order value: 2 description: name: description annotations: sh:order: tag: sh:order value: 3 dash:singleLine: tag: dash:singleLine value: false display_label: name: display_label annotations: sh:order: tag: sh:order value: 4 recommended: true class_uri: dldemoed:XYZDimension XYZFactor: name: XYZFactor description: A tag associated with a categorical, independent variable in a study design. Factors can have an investigative role (e.g., treatments), or have an organizational nature (e.g., site labels). title: Factor comments: - The relationship of a factor "level" with the broader factor can be described via `broader_mappings`. from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased is_a: FlatThing slots: - name - factor_level_of - short_name slot_usage: name: name: name annotations: sh:order: tag: sh:order value: 1 recommended: true short_name: name: short_name annotations: sh:order: tag: sh:order value: 2 factor_level_of: name: factor_level_of annotations: sh:order: tag: sh:order value: 3 description: name: description annotations: sh:order: tag: sh:order value: 4 dash:singleLine: tag: dash:singleLine value: false display_label: name: display_label annotations: sh:order: tag: sh:order value: 5 recommended: true class_uri: dldemoed:XYZFactor XYZFileFormat: name: XYZFileFormat description: The file format of a distribution. title: FileFormat from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased is_a: FlatThing slots: - name - short_name slot_usage: name: name: name annotations: sh:order: tag: sh:order value: 1 recommended: true short_name: name: short_name annotations: sh:order: tag: sh:order value: 2 description: name: description annotations: sh:order: tag: sh:order value: 3 dash:singleLine: tag: dash:singleLine value: false display_label: name: display_label annotations: sh:order: tag: sh:order value: 4 recommended: true class_uri: dldemoed:XYZFileFormat XYZInstrument: name: XYZInstrument description: A material entity that is designed to perform a function in a scientific investigation, but is not a reagent. title: Instrument from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased exact_mappings: - obo:OBI_0000968 is_a: FlatThing slots: - name - short_name slot_usage: name: name: name annotations: sh:order: tag: sh:order value: 1 recommended: true short_name: name: short_name annotations: sh:order: tag: sh:order value: 2 description: name: description annotations: sh:order: tag: sh:order value: 3 dash:singleLine: tag: dash:singleLine value: false display_label: name: display_label annotations: sh:order: tag: sh:order value: 4 recommended: true class_uri: dldemoed:XYZInstrument XYZProtocol: name: XYZProtocol description: A plan specification which has sufficient level of detail and quantitative information to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the process. title: Protocol from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased exact_mappings: - obo:OBI_0000272 is_a: FlatThing slots: - name - short_name slot_usage: name: name: name annotations: sh:order: tag: sh:order value: 1 recommended: true short_name: name: short_name annotations: sh:order: tag: sh:order value: 2 description: name: description annotations: sh:order: tag: sh:order value: 3 dash:singleLine: tag: dash:singleLine value: false display_label: name: display_label annotations: sh:order: tag: sh:order value: 4 recommended: true class_uri: dldemoed:XYZProtocol XYZStudy: name: XYZStudy description: 'A planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s).' title: Study from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased exact_mappings: - obo:OBI_0000066 - sio:SIO_001066 narrow_mappings: - sio:SIO_000994 - obo:NCIT_C15206 is_a: FlatThing slots: - dimensions - factors - instruments - implements - name - short_name slot_usage: name: name: name annotations: sh:order: tag: sh:order value: 1 recommended: true short_name: name: short_name annotations: sh:order: tag: sh:order value: 2 implements: name: implements annotations: sh:order: tag: sh:order value: 3 recommended: true factors: name: factors annotations: sh:order: tag: sh:order value: 4 recommended: true instruments: name: instruments annotations: sh:order: tag: sh:order value: 5 dimensions: name: dimensions annotations: sh:order: tag: sh:order value: 6 recommended: true description: name: description annotations: sh:order: tag: sh:order value: 7 dash:singleLine: tag: dash:singleLine value: false display_label: name: display_label annotations: sh:order: tag: sh:order value: 8 recommended: true class_uri: dldemoed:XYZStudy XYZStudyActivity: name: XYZStudyActivity description: An activity in the context of a study, where one or more subjects are studied under the influence of certain factors, with one or more instruments, following a set of protocols title: StudyActivity from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased is_a: FlatThing slots: - factors - instruments - implements - part_of - study - subjects slot_usage: study: name: study annotations: sh:order: tag: sh:order value: 1 required: true subjects: name: subjects annotations: sh:order: tag: sh:order value: 2 recommended: true implements: name: implements annotations: sh:order: tag: sh:order value: 3 recommended: true factors: name: factors annotations: sh:order: tag: sh:order value: 4 recommended: true instruments: name: instruments annotations: sh:order: tag: sh:order value: 5 part_of: name: part_of annotations: sh:order: tag: sh:order value: 6 range: XYZStudyActivity description: name: description annotations: sh:order: tag: sh:order value: 7 dash:singleLine: tag: dash:singleLine value: false display_label: name: display_label annotations: sh:order: tag: sh:order value: 8 recommended: true class_uri: dldemoed:XYZStudyActivity XYZSubject: name: XYZSubject description: A subject is an entity being investigated in a study. This is a contextual entity. One and the same entity can be different subjects in two different studies. title: Subject from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased is_a: FlatThing slots: - derived_from - name - study - subject_type slot_usage: study: name: study annotations: sh:order: tag: sh:order value: 1 required: true name: name: name annotations: sh:order: tag: sh:order value: 2 recommended: true subject_type: name: subject_type annotations: sh:order: tag: sh:order value: 3 recommended: true derived_from: name: derived_from annotations: sh:order: tag: sh:order value: 4 description: Source subject. title: Specimen of range: XYZSubject description: name: description annotations: sh:order: tag: sh:order value: 5 dash:singleLine: tag: dash:singleLine value: false display_label: name: display_label annotations: sh:order: tag: sh:order value: 6 recommended: true class_uri: dldemoed:XYZSubject XYZSubjectType: name: XYZSubjectType description: Classifier for the nature of a subject. title: SubjectType from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased is_a: FlatThing slots: - name slot_usage: name: name: name annotations: sh:order: tag: sh:order value: 1 recommended: true description: name: description annotations: sh:order: tag: sh:order value: 2 dash:singleLine: tag: dash:singleLine value: false display_label: name: display_label annotations: sh:order: tag: sh:order value: 3 recommended: true class_uri: dldemoed:XYZSubjectType XYZUnit: name: XYZUnit description: Standardized quantity of a physical quality. title: Unit from_schema: https://concepts.datalad.org/s/demo-empirical-data/unreleased exact_mappings: - obo:UO_0000000 is_a: FlatThing slots: - name - short_name slot_usage: name: name: name annotations: sh:order: tag: sh:order value: 1 recommended: true short_name: name: short_name annotations: sh:order: tag: sh:order value: 2 description: name: description annotations: sh:order: tag: sh:order value: 3 dash:singleLine: tag: dash:singleLine value: false display_label: name: display_label annotations: sh:order: tag: sh:order value: 4 recommended: true class_uri: dldemoed:XYZUnit ThingMixin: name: ThingMixin description: Mix-in with the common interface of `Thing` and `AttributeSpecification`. This interface enables type specifications (`rdf:type`) for things and attributes via a `type` designator slot to indicate specialized schema classes for validation where a slot's `range` is too generic. A thing or attribute can be further describe with statements on qualified relations to other things (`characterized_by`), or inline attributes (`attributes`). A set of `mappings` slots enables the alignment for arbitrary external schemas and terminologies. from_schema: https://concepts.datalad.org/s/things/v1 mixin: true slots: - annotations - broad_mappings - close_mappings - description - exact_mappings - attributes - characterized_by - narrow_mappings - related_mappings - schema_type class_uri: dlthings:ThingMixin ValueSpecificationMixin: name: ValueSpecificationMixin description: Mix-in for a (structured) value specification. Two slots are provided to define a (literal) value (`value`) and its type (`range`). from_schema: https://concepts.datalad.org/s/things/v1 mixin: true slots: - range - value class_uri: dlthings:ValueSpecificationMixin AttributeSpecification: name: AttributeSpecification description: An attribute is conceptually a thing, but it requires no dedicated identifier (`pid`). Instead, it is linked to a `Thing` via its `attributes` slot and declares a `predicate` on the nature of the relationship. from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - sio:SIO_000614 close_mappings: - dlthings:Thing mixins: - ThingMixin - ValueSpecificationMixin slots: - predicate slot_usage: predicate: name: predicate required: true class_uri: dlthings:AttributeSpecification Property: name: Property description: An RDF property, a `Thing` used to define a `predicate`, for example in a `Statement`. from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - rdf:Property is_a: Thing class_uri: dlthings:Property Statement: name: Statement description: An RDF statement that links a `predicate` (a `Property`) with an `object` (a `Thing`) to the subject to form a triple. A `Statement` is used to qualify a relation to a `Thing` referenced by its identifier. For specifying a qualified relation to an attribute that has no dedicated identifier, use an `AttributeSpecification`. from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - rdf:Statement slots: - object - predicate slot_usage: object: name: object range: Thing required: true predicate: name: predicate required: true class_uri: dlthings:Statement Thing: name: Thing description: The most basic, identifiable item. In addition to the slots that are common between a `Thing` and an `AttributeSpecification` (see `ThingMixin`), two additional slots are provided. The `pid` slot takes the required identifier for a `Thing`. The `relation` slot allows for the inline specification of other `Thing` instances. Such a relation is unqualified (and symmetric), and should be further characterized via a `Statement` (see `characterized_by`). From a schema perspective, the `relation` slots allows for building self-contained, structured documents (e.g., a JSON object) with arbitrarily complex information on a `Thing`. from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - schema:Thing mixins: - ThingMixin slots: - pid - relations slot_usage: pid: name: pid annotations: sh:order: tag: sh:order value: 1 characterized_by: name: characterized_by annotations: sh:order: tag: sh:order value: 2 attributes: name: attributes annotations: sh:order: tag: sh:order value: 3 description: name: description annotations: sh:order: tag: sh:order value: 4 dash:singleLine: tag: dash:singleLine value: false annotations: name: annotations annotations: sh:order: tag: sh:order value: 5 relations: name: relations annotations: sh:order: tag: sh:order value: 6 exact_mappings: name: exact_mappings annotations: sh:order: tag: sh:order value: 7 close_mappings: name: close_mappings annotations: sh:order: tag: sh:order value: 8 broad_mappings: name: broad_mappings annotations: sh:order: tag: sh:order value: 9 narrow_mappings: name: narrow_mappings annotations: sh:order: tag: sh:order value: 10 related_mappings: name: related_mappings annotations: sh:order: tag: sh:order value: 11 class_uri: dlthings:Thing ValueSpecification: name: ValueSpecification description: A `Thing` that is a value of some kind. This class can be used to describe an outcome of a measurement, a factual value or constant, or other qualitative or quantitative information with an associated identifier. If no identifier is available, an `AttributeSpecification` can be used within the context of an associated `Thing` (`attributes`). from_schema: https://concepts.datalad.org/s/things/v1 exact_mappings: - obo:OBI_0001933 is_a: Thing mixins: - ValueSpecificationMixin slot_usage: value: name: value notes: - It is required, because when it is not needed, `Thing` should be used as a type. Its absence is therefore likely a sign of an error. required: true class_uri: dlthings:ValueSpecification Annotation: name: Annotation description: A tag/value pair with the semantics of OWL Annotation. from_schema: https://concepts.datalad.org/s/things/v1 slots: - annotation_tag - annotation_value slot_usage: annotation_tag: name: annotation_tag key: true class_uri: dlthings:Annotation Identifier: name: Identifier description: An identifier is a label that uniquely identifies an item in a particular context. Some identifiers are globally unique. All identifiers are unique within their individual scope. from_schema: https://concepts.datalad.org/s/identifiers/unreleased close_mappings: - ADMS:Identifier slots: - creator - notation - schema_type slot_usage: notation: name: notation required: true class_uri: dlidentifiers:Identifier IssuedIdentifier: name: IssuedIdentifier description: An identifier that was issued by a particular agent with a notation that has no (or an undefined) relation to the nature of the identified entity. from_schema: https://concepts.datalad.org/s/identifiers/unreleased see_also: - https://semiceu.github.io/ADMS/releases/2.00/#Identifier exact_mappings: - ADMS:Identifier is_a: Identifier slots: - schema_agency class_uri: dlidentifiers:IssuedIdentifier ComputedIdentifier: name: ComputedIdentifier description: An identifier that has been derived from information on the identified entity. from_schema: https://concepts.datalad.org/s/identifiers/unreleased narrow_mappings: - spdx:Checksum is_a: Identifier class_uri: dlidentifiers:ComputedIdentifier Checksum: name: Checksum description: A Checksum is a value that allows to check the integrity of the contents of a file. Even small changes to the content of the file will change its checksum. This class allows the results of a variety of checksum and cryptographic message digest algorithms to be represented. from_schema: https://concepts.datalad.org/s/identifiers/unreleased exact_mappings: - spdx:Checksum is_a: ComputedIdentifier slot_usage: creator: name: creator description: Identifies the software agent (algorithm) used to produce the subject `Checksum`. exact_mappings: - spdx:algorithm required: true notation: name: notation description: Lower case hexadecimal encoded checksum digest value. exact_mappings: - spdx:checksumValue range: HexBinary required: true class_uri: dlidentifiers:Checksum DOI: name: DOI description: Digital Object Identifier (DOI; ISO 26324), an identifier system governed by the DOI Foundation, where individual identifiers are issued by one of several registration agencies. from_schema: https://concepts.datalad.org/s/identifiers/unreleased is_a: IssuedIdentifier slot_usage: creator: name: creator description: By default, the creator is identified as "https://doi.org". ifabsent: uriorcurie(https://doi.org) notation: name: notation description: The identifier notation is specified without a URL-prefix, or a `doi:` prefix. pattern: (?i)^(?!(?:https?://|doi:)).+$ schema_agency: name: schema_agency description: By default, the schema agency is identified as `DOI Foundation`. ifabsent: string(DOI Foundation) class_uri: dlidentifiers:DOI unique_keys: value: unique_key_name: value unique_key_slots: - notation description: The DOI notation is globally unique within the scope of DOIs FlatThing: name: FlatThing description: '`Thing` variant that provides a basis for the annotation and curation of more specialized concepts. It equips `Thing` with additional slots to annotate labels and notes that aid information entry and curation in workflows and user interfaces. Moreover, the `identifiers` slot enables the specification is any number of identifiers (issued or computed) associated with a `Thing`.' title: Thing from_schema: https://concepts.datalad.org/s/flat/unreleased is_a: Thing slots: - display_label - display_note - editorial_note - identifiers slot_usage: characterized_by: name: characterized_by range: FlatStatement attributes: name: attributes range: FlatAttributeSpecification annotations: name: annotations range: FlatAnnotation class_uri: dlflat:FlatThing FlatStatement: name: FlatStatement description: An RDF statement that links a `predicate` (a `Property`) with an `object` (a `Thing`) to the subject to form a triple. A `Statement` is used to qualify a relation to a `Thing` referenced by its identifier. For specifying a qualified relation to an attribute that has no dedicated identifier, use an `AttributeSpecification`. title: Statement from_schema: https://concepts.datalad.org/s/flat/unreleased is_a: Statement slot_usage: predicate: name: predicate range: FlatProperty class_uri: dlflat:FlatStatement FlatProperty: name: FlatProperty description: An RDF property, a `Thing` used to define a `predicate`, for example in a `Statement`. title: Property from_schema: https://concepts.datalad.org/s/flat/unreleased is_a: Property slots: - display_label - display_note - editorial_note class_uri: dlflat:FlatProperty FlatAttributeSpecification: name: FlatAttributeSpecification description: An attribute is conceptually a thing, but it requires no dedicated identifier (`pid`). Instead, it is linked to a `Thing` via its `attributes` slot and declares a `predicate` on the nature of the relationship. title: Attribute from_schema: https://concepts.datalad.org/s/flat/unreleased is_a: AttributeSpecification slot_usage: predicate: name: predicate range: FlatProperty class_uri: dlflat:FlatAttributeSpecification AnnotationTag: name: AnnotationTag description: A tag identifying an annotation. title: Annotation tag from_schema: https://concepts.datalad.org/s/flat/unreleased is_a: FlatThing class_uri: dlflat:AnnotationTag FlatAnnotation: name: FlatAnnotation description: A tag/value pair with the semantics of OWL Annotation. title: Annotation from_schema: https://concepts.datalad.org/s/flat/unreleased is_a: Annotation slot_usage: annotation_tag: name: annotation_tag key: true range: AnnotationTag class_uri: dlflat:FlatAnnotation source_file: src/demo-empirical-data/unreleased.yaml