Data models for generic empirical data

Demo schema for a generic data annotation use case. This schema is deliberately not using the many schema building block available for building submission-focused (FLAT) schemas. Instead it shows how to build something custom solely based on the fundational flat.

All class names are prefixed with XYZ to label them as use-case specific.

More information may be available on the schema's about page.

The schema definition is available as

• JSON-LD context
• LinkML YAML
• LinkML YAML (static/resolved)
• OWL TTL
• SHACL TTL

URI: https://concepts.datalad.org/s/demo-empirical-data

Name: demo-empirical-data-schema

Schema Diagram

erDiagram
Annotation {
    string annotation_value  
}
AttributeSpecification {
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
    uriorcurie range  
    string value  
}
Checksum {
    uriorcurie creator  
    HexBinary notation  
    NodeUriOrCurie schema_type  
}
ComputedIdentifier {
    uriorcurie creator  
    string notation  
    NodeUriOrCurie schema_type  
}
DOI {
    string schema_agency  
    uriorcurie creator  
    string notation  
    NodeUriOrCurie schema_type  
}
FlatThing {
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
Identifier {
    uriorcurie creator  
    string notation  
    NodeUriOrCurie schema_type  
}
IssuedIdentifier {
    string schema_agency  
    uriorcurie creator  
    string notation  
    NodeUriOrCurie schema_type  
}
Property {
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
Statement {

}
Thing {
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
ThingMixin {
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
ValueSpecification {
    uriorcurie range  
    string value  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
ValueSpecificationMixin {
    uriorcurie range  
    string value  
}
XYZDataItem {
    string value  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZDataset {
    string name  
    string short_name  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZDimension {
    string name  
    string short_name  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZDistribution {
    NonNegativeInteger byte_size  
    string media_type  
    string name  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZFactor {
    string name  
    string short_name  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZFileFormat {
    string name  
    string short_name  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZInstrument {
    string name  
    string short_name  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZOrganization {
    string name  
    string short_name  
    XYZOrganizationType organization_type  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZPerson {
    stringList additional_names  
    string family_name  
    string given_name  
    string honorific_name_prefix  
    string honorific_name_suffix  
    EmailAddressList emails  
    string orcid  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZProtocol {
    string name  
    string short_name  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZStudy {
    string name  
    string short_name  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZStudyActivity {
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZSubject {
    string name  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZSubjectType {
    string name  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}
XYZUnit {
    string name  
    string short_name  
    string display_label  
    string display_note  
    stringList editorial_note  
    uriorcurie pid  
    uriorcurieList broad_mappings  
    uriorcurieList close_mappings  
    string description  
    uriorcurieList exact_mappings  
    uriorcurieList narrow_mappings  
    uriorcurieList related_mappings  
    NodeUriOrCurie schema_type  
}

Annotation ||--|o Thing : "annotation_tag"
AttributeSpecification ||--|| Property : "predicate"
AttributeSpecification ||--}o Annotation : "annotations"
AttributeSpecification ||--}o AttributeSpecification : "attributes"
AttributeSpecification ||--}o Statement : "characterized_by"
FlatThing ||--}o Annotation : "annotations"
FlatThing ||--}o AttributeSpecification : "attributes"
FlatThing ||--}o Identifier : "identifiers"
FlatThing ||--}o Statement : "characterized_by"
FlatThing ||--}o Thing : "relations"
Property ||--}o Annotation : "annotations"
Property ||--}o AttributeSpecification : "attributes"
Property ||--}o Statement : "characterized_by"
Property ||--}o Thing : "relations"
Statement ||--|| Property : "predicate"
Statement ||--|| Thing : "object"
Thing ||--}o Annotation : "annotations"
Thing ||--}o AttributeSpecification : "attributes"
Thing ||--}o Statement : "characterized_by"
Thing ||--}o Thing : "relations"
ThingMixin ||--}o Annotation : "annotations"
ThingMixin ||--}o AttributeSpecification : "attributes"
ThingMixin ||--}o Statement : "characterized_by"
ValueSpecification ||--}o Annotation : "annotations"
ValueSpecification ||--}o AttributeSpecification : "attributes"
ValueSpecification ||--}o Statement : "characterized_by"
ValueSpecification ||--}o Thing : "relations"
XYZDataItem ||--|o XYZSubject : "derived_from"
XYZDataItem ||--|o XYZUnit : "unit"
XYZDataItem ||--|| XYZDataset : "part_of"
XYZDataItem ||--|| XYZStudyActivity : "generated_by"
XYZDataItem ||--}o Annotation : "annotations"
XYZDataItem ||--}o AttributeSpecification : "attributes"
XYZDataItem ||--}o Identifier : "identifiers"
XYZDataItem ||--}o Statement : "characterized_by"
XYZDataItem ||--}o Thing : "relations"
XYZDataItem ||--}o XYZDimension : "dimensions"
XYZDataset ||--|o XYZDataset : "part_of"
XYZDataset ||--|o XYZStudyActivity : "generated_by"
XYZDataset ||--}o Annotation : "annotations"
XYZDataset ||--}o AttributeSpecification : "attributes"
XYZDataset ||--}o Identifier : "identifiers"
XYZDataset ||--}o Statement : "characterized_by"
XYZDataset ||--}o Thing : "relations"
XYZDataset ||--}o XYZDimension : "dimensions"
XYZDimension ||--}o Annotation : "annotations"
XYZDimension ||--}o AttributeSpecification : "attributes"
XYZDimension ||--}o Identifier : "identifiers"
XYZDimension ||--}o Statement : "characterized_by"
XYZDimension ||--}o Thing : "relations"
XYZDistribution ||--|o XYZDistribution : "part_of"
XYZDistribution ||--|o XYZFileFormat : "format"
XYZDistribution ||--|| XYZDataItem : "distribution_of"
XYZDistribution ||--}o Annotation : "annotations"
XYZDistribution ||--}o AttributeSpecification : "attributes"
XYZDistribution ||--}o Checksum : "checksums"
XYZDistribution ||--}o Identifier : "identifiers"
XYZDistribution ||--}o Statement : "characterized_by"
XYZDistribution ||--}o Thing : "relations"
XYZFactor ||--|o XYZFactor : "factor_level_of"
XYZFactor ||--}o Annotation : "annotations"
XYZFactor ||--}o AttributeSpecification : "attributes"
XYZFactor ||--}o Identifier : "identifiers"
XYZFactor ||--}o Statement : "characterized_by"
XYZFactor ||--}o Thing : "relations"
XYZFileFormat ||--}o Annotation : "annotations"
XYZFileFormat ||--}o AttributeSpecification : "attributes"
XYZFileFormat ||--}o Identifier : "identifiers"
XYZFileFormat ||--}o Statement : "characterized_by"
XYZFileFormat ||--}o Thing : "relations"
XYZInstrument ||--}o Annotation : "annotations"
XYZInstrument ||--}o AttributeSpecification : "attributes"
XYZInstrument ||--}o Identifier : "identifiers"
XYZInstrument ||--}o Statement : "characterized_by"
XYZInstrument ||--}o Thing : "relations"
XYZOrganization ||--|o XYZOrganization : "parent_organization"
XYZOrganization ||--}o Annotation : "annotations"
XYZOrganization ||--}o AttributeSpecification : "attributes"
XYZOrganization ||--}o Identifier : "identifiers"
XYZOrganization ||--}o Statement : "characterized_by"
XYZOrganization ||--}o Thing : "relations"
XYZOrganization ||--}o XYZPerson : "leaders"
XYZPerson ||--}o Annotation : "annotations"
XYZPerson ||--}o AttributeSpecification : "attributes"
XYZPerson ||--}o Identifier : "identifiers"
XYZPerson ||--}o Statement : "characterized_by"
XYZPerson ||--}o Thing : "relations"
XYZPerson ||--}o XYZOrganization : "member_of"
XYZProtocol ||--}o Annotation : "annotations"
XYZProtocol ||--}o AttributeSpecification : "attributes"
XYZProtocol ||--}o Identifier : "identifiers"
XYZProtocol ||--}o Statement : "characterized_by"
XYZProtocol ||--}o Thing : "relations"
XYZStudy ||--}o Annotation : "annotations"
XYZStudy ||--}o AttributeSpecification : "attributes"
XYZStudy ||--}o Identifier : "identifiers"
XYZStudy ||--}o Statement : "characterized_by"
XYZStudy ||--}o Thing : "relations"
XYZStudy ||--}o XYZDimension : "dimensions"
XYZStudy ||--}o XYZFactor : "factors"
XYZStudy ||--}o XYZInstrument : "instruments"
XYZStudy ||--}o XYZProtocol : "implements"
XYZStudyActivity ||--|o XYZStudyActivity : "part_of"
XYZStudyActivity ||--|| XYZStudy : "study"
XYZStudyActivity ||--}o Annotation : "annotations"
XYZStudyActivity ||--}o AttributeSpecification : "attributes"
XYZStudyActivity ||--}o Identifier : "identifiers"
XYZStudyActivity ||--}o Statement : "characterized_by"
XYZStudyActivity ||--}o Thing : "relations"
XYZStudyActivity ||--}o XYZFactor : "factors"
XYZStudyActivity ||--}o XYZInstrument : "instruments"
XYZStudyActivity ||--}o XYZProtocol : "implements"
XYZStudyActivity ||--}o XYZSubject : "subjects"
XYZSubject ||--|o XYZSubject : "derived_from"
XYZSubject ||--|o XYZSubjectType : "subject_type"
XYZSubject ||--|| XYZStudy : "study"
XYZSubject ||--}o Annotation : "annotations"
XYZSubject ||--}o AttributeSpecification : "attributes"
XYZSubject ||--}o Identifier : "identifiers"
XYZSubject ||--}o Statement : "characterized_by"
XYZSubject ||--}o Thing : "relations"
XYZSubjectType ||--}o Annotation : "annotations"
XYZSubjectType ||--}o AttributeSpecification : "attributes"
XYZSubjectType ||--}o Identifier : "identifiers"
XYZSubjectType ||--}o Statement : "characterized_by"
XYZSubjectType ||--}o Thing : "relations"
XYZUnit ||--}o Annotation : "annotations"
XYZUnit ||--}o AttributeSpecification : "attributes"
XYZUnit ||--}o Identifier : "identifiers"
XYZUnit ||--}o Statement : "characterized_by"
XYZUnit ||--}o Thing : "relations"

Classes

Slots

Enumerations

Types

Subsets